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    Bptf bromodomain PHD finger transcription factor [ Rattus norvegicus (Norway rat) ]

    Gene ID: 303617, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Bptfprovided by RGD
    Official Full Name
    bromodomain PHD finger transcription factorprovided by RGD
    Primary source
    RGD:1307039
    See related
    EnsemblRapid:ENSRNOG00000047296 AllianceGenome:RGD:1307039
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Falz
    Summary
    Predicted to enable sequence-specific DNA binding activity. Predicted to contribute to ATP-dependent activity, acting on DNA. Involved in cellular response to nerve growth factor stimulus. Located in cell body; dendrite; and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in Kaposi's sarcoma; alcohol dependence; and neurodevelopmental disorder with dysmorphic facies and distal limb anomalies. Orthologous to human BPTF (bromodomain PHD finger transcription factor). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 186.8), Spleen (RPKM 143.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Bptf in Genome Data Viewer
    Location:
    10q32.1
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (92480007..92582485, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (91980279..92082731, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (95248573..95350162, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon CCG) 2 Neighboring gene similar to human chromosome 17 open reading frame 58 Neighboring gene uncharacterized LOC120095194 Neighboring gene U11 spliceosomal RNA Neighboring gene nucleolar protein 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Expression of fetal ALZ-50 reactive clone 1 (FAC1) in dentate gyrus following entorhinal cortex lesion. Styren SD, et al. J Comp Neurol, 1997 Oct 6. PMID 9378851
    2. Expression of FAC1 in activated microglia during Alzheimer's disease. Bowser R, et al. Neurosci Lett, 1998 Sep 11. PMID 9792236
    3. FAC1 expression and localization in motor neurons of developing, adult, and amyotrophic lateral sclerosis spinal cord. Mu X, et al. Exp Neurol, 1997 Jul. PMID 9225734
    4. DNA binding activity of the fetal Alz-50 clone 1 (FAC1) protein is enhanced by phosphorylation. Jordan-Sciutto KL, et al. Biochem Biophys Res Commun, 1999 Jul 14. PMID 10403843
    5. Fetal Alz-50 clone 1, a novel zinc finger protein, binds a specific DNA sequence and acts as a transcriptional regulator. Jordan-Sciutto KL, et al. J Biol Chem, 1999 Dec 3. PMID 10575013, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    contributes_to ATP-dependent activity, acting on DNA ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables methylated histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables sequence-specific DNA binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within anterior/posterior pattern specification ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in brain development ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in cellular response to nerve growth factor stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in chromatin remodeling ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within embryonic placenta development ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within endoderm development ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in regulation of DNA-templated transcription ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    part_of ATPase complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of NURF complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of NURF complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cell body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chromatin ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in dendrite IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleosome-remodeling factor subunit BPTF
    Names
    fetal Alzheimer antigen

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127535.3 → NP_001121007.2  nucleosome-remodeling factor subunit BPTF

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      A0A8I5ZVH2
      Related
      ENSRNOP00000082906.2, ENSRNOT00000119473.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      92480007..92582485 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063269218.1 → XP_063125288.1  nucleosome-remodeling factor subunit BPTF isoform X13

      UniProtKB/TrEMBL
      A0A8I6ALT2

    2. XM_039087419.2 → XP_038943347.1  nucleosome-remodeling factor subunit BPTF isoform X5

      UniProtKB/TrEMBL
      A0A8I5ZVH2
      Conserved Domains (8) summary
      cd05509
      Location:2990 → 3090
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      smart00571
      Location:250 → 309
      DDT; domain in different transcription and chromosome remodeling factors
      PHA03169
      Location:574 → 759
      PHA03169; hypothetical protein; Provisional
      cd15559
      Location:402 → 444
      PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      cd15560
      Location:2928 → 2974
      PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      pfam03157
      Location:2134 → 2510
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam13868
      Location:2642 → 2777
      TPH; Trichohyalin-plectin-homology domain
      pfam15613
      Location:466 → 534
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    3. XM_039087420.2 → XP_038943348.1  nucleosome-remodeling factor subunit BPTF isoform X6

      UniProtKB/TrEMBL
      A0A8I6GLB4
      Conserved Domains (7) summary
      cd05509
      Location:2989 → 3089
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      smart00571
      Location:250 → 309
      DDT; domain in different transcription and chromosome remodeling factors
      cd15559
      Location:402 → 444
      PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      cd15560
      Location:2927 → 2973
      PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      pfam03157
      Location:2133 → 2509
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam13868
      Location:2641 → 2776
      TPH; Trichohyalin-plectin-homology domain
      pfam15613
      Location:466 → 534
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    4. XM_039087415.2 → XP_038943343.1  nucleosome-remodeling factor subunit BPTF isoform X2

      UniProtKB/TrEMBL
      A0A8I5ZVH2
      Conserved Domains (7) summary
      cd05509
      Location:3049 → 3149
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      smart00571
      Location:250 → 309
      DDT; domain in different transcription and chromosome remodeling factors
      cd15559
      Location:402 → 444
      PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      cd15560
      Location:2987 → 3033
      PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      pfam03157
      Location:2193 → 2569
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam13868
      Location:2701 → 2836
      TPH; Trichohyalin-plectin-homology domain
      pfam15613
      Location:466 → 534
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    5. XM_039087418.2 → XP_038943346.1  nucleosome-remodeling factor subunit BPTF isoform X4

      UniProtKB/TrEMBL
      A0A8I5ZVH2
      Conserved Domains (8) summary
      cd05509
      Location:2992 → 3092
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      smart00571
      Location:250 → 309
      DDT; domain in different transcription and chromosome remodeling factors
      PHA03169
      Location:574 → 759
      PHA03169; hypothetical protein; Provisional
      cd15559
      Location:402 → 444
      PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      cd15560
      Location:2930 → 2976
      PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      pfam03157
      Location:2194 → 2570
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam13868
      Location:2702 → 2837
      TPH; Trichohyalin-plectin-homology domain
      pfam15613
      Location:466 → 534
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    6. XM_039087422.2 → XP_038943350.1  nucleosome-remodeling factor subunit BPTF isoform X8

      UniProtKB/TrEMBL
      A0A8I5ZVH2
      Conserved Domains (8) summary
      cd05509
      Location:2992 → 3092
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      smart00571
      Location:250 → 309
      DDT; domain in different transcription and chromosome remodeling factors
      PHA03169
      Location:574 → 759
      PHA03169; hypothetical protein; Provisional
      cd15559
      Location:402 → 444
      PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      cd15560
      Location:2930 → 2976
      PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      pfam03157
      Location:2194 → 2570
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam13868
      Location:2702 → 2837
      TPH; Trichohyalin-plectin-homology domain
      pfam15613
      Location:466 → 534
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    7. XM_039087414.2 → XP_038943342.1  nucleosome-remodeling factor subunit BPTF isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZVH2
      Conserved Domains (8) summary
      cd05509
      Location:3050 → 3150
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      smart00571
      Location:250 → 309
      DDT; domain in different transcription and chromosome remodeling factors
      PHA03169
      Location:574 → 759
      PHA03169; hypothetical protein; Provisional
      cd15559
      Location:402 → 444
      PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      cd15560
      Location:2988 → 3034
      PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      pfam03157
      Location:2194 → 2570
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam13868
      Location:2702 → 2837
      TPH; Trichohyalin-plectin-homology domain
      pfam15613
      Location:466 → 534
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    8. XM_039087416.2 → XP_038943344.1  nucleosome-remodeling factor subunit BPTF isoform X3

      UniProtKB/TrEMBL
      A0A8I5ZVH2
      Conserved Domains (8) summary
      cd05509
      Location:3050 → 3150
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      smart00571
      Location:250 → 309
      DDT; domain in different transcription and chromosome remodeling factors
      PHA03169
      Location:574 → 759
      PHA03169; hypothetical protein; Provisional
      cd15559
      Location:402 → 444
      PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      cd15560
      Location:2988 → 3034
      PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      pfam03157
      Location:2194 → 2570
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam13868
      Location:2702 → 2837
      TPH; Trichohyalin-plectin-homology domain
      pfam15613
      Location:466 → 534
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    9. XM_039087423.2 → XP_038943351.1  nucleosome-remodeling factor subunit BPTF isoform X9

      UniProtKB/TrEMBL
      A0A8I6ALT2
      Conserved Domains (7) summary
      cd05509
      Location:2923 → 3023
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      smart00571
      Location:250 → 309
      DDT; domain in different transcription and chromosome remodeling factors
      cd15559
      Location:402 → 444
      PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      cd15560
      Location:2861 → 2907
      PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      pfam03157
      Location:2067 → 2443
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam13868
      Location:2575 → 2710
      TPH; Trichohyalin-plectin-homology domain
      pfam15613
      Location:466 → 534
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    10. XM_039087421.2 → XP_038943349.1  nucleosome-remodeling factor subunit BPTF isoform X7

      UniProtKB/TrEMBL
      A0A8I6ALT2
      Conserved Domains (8) summary
      cd05509
      Location:2984 → 3084
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      smart00571
      Location:250 → 309
      DDT; domain in different transcription and chromosome remodeling factors
      PHA03169
      Location:574 → 713
      PHA03169; hypothetical protein; Provisional
      cd15559
      Location:402 → 444
      PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      cd15560
      Location:2922 → 2968
      PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      pfam03157
      Location:2128 → 2504
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam13868
      Location:2636 → 2771
      TPH; Trichohyalin-plectin-homology domain
      pfam15613
      Location:466 → 534
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    11. XM_039087426.2 → XP_038943354.1  nucleosome-remodeling factor subunit BPTF isoform X18

      UniProtKB/TrEMBL
      A0A8I6ALT2
      Conserved Domains (7) summary
      cd05509
      Location:2811 → 2911
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      smart00571
      Location:250 → 309
      DDT; domain in different transcription and chromosome remodeling factors
      cd15559
      Location:402 → 444
      PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      cd15560
      Location:2749 → 2795
      PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      pfam03157
      Location:1908 → 2389
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam13868
      Location:2521 → 2656
      TPH; Trichohyalin-plectin-homology domain
      pfam15613
      Location:466 → 534
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    12. XM_039087425.2 → XP_038943353.1  nucleosome-remodeling factor subunit BPTF isoform X15

      UniProtKB/TrEMBL
      A6HK68
      Conserved Domains (8) summary
      cd05509
      Location:2851 → 2951
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      smart00571
      Location:250 → 309
      DDT; domain in different transcription and chromosome remodeling factors
      PHA03169
      Location:574 → 759
      PHA03169; hypothetical protein; Provisional
      cd15559
      Location:402 → 444
      PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      cd15560
      Location:2789 → 2835
      PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      pfam03157
      Location:2260 → 2569
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam13868
      Location:2583 → 2699
      TPH; Trichohyalin-plectin-homology domain
      pfam15613
      Location:466 → 534
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    13. XM_063269221.1 → XP_063125291.1  nucleosome-remodeling factor subunit BPTF isoform X17

      UniProtKB/TrEMBL
      A6HK68

    14. XM_039087424.2 → XP_038943352.1  nucleosome-remodeling factor subunit BPTF isoform X10

      UniProtKB/TrEMBL
      A0A0G2K7N8
      Related
      ENSRNOP00000088218.2, ENSRNOT00000104873.2
      Conserved Domains (8) summary
      cd05509
      Location:2909 → 3009
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      smart00571
      Location:250 → 309
      DDT; domain in different transcription and chromosome remodeling factors
      PHA03169
      Location:574 → 759
      PHA03169; hypothetical protein; Provisional
      cd15559
      Location:402 → 444
      PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      cd15560
      Location:2847 → 2893
      PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      pfam03157
      Location:2260 → 2569
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam13868
      Location:2583 → 2699
      TPH; Trichohyalin-plectin-homology domain
      pfam15613
      Location:466 → 534
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    15. XM_063269216.1 → XP_063125286.1  nucleosome-remodeling factor subunit BPTF isoform X11

      UniProtKB/TrEMBL
      A0A0G2K7N8

    16. XM_063269217.1 → XP_063125287.1  nucleosome-remodeling factor subunit BPTF isoform X12

      UniProtKB/TrEMBL
      A0A8I6ALT2
      Related
      ENSRNOP00000094284.2, ENSRNOT00000104176.2

    17. XM_039087427.2 → XP_038943355.1  nucleosome-remodeling factor subunit BPTF isoform X20

      UniProtKB/TrEMBL
      A0A0G2K7N8
      Conserved Domains (7) summary
      cd05509
      Location:2670 → 2770
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      smart00571
      Location:250 → 309
      DDT; domain in different transcription and chromosome remodeling factors
      cd15559
      Location:402 → 444
      PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      cd15560
      Location:2608 → 2654
      PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      pfam03157
      Location:2079 → 2388
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam13868
      Location:2402 → 2518
      TPH; Trichohyalin-plectin-homology domain
      pfam15613
      Location:466 → 534
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    18. XM_039087428.2 → XP_038943356.1  nucleosome-remodeling factor subunit BPTF isoform X19

      UniProtKB/TrEMBL
      A0A0G2K7N8
      Conserved Domains (8) summary
      cd05509
      Location:2797 → 2897
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      smart00571
      Location:250 → 309
      DDT; domain in different transcription and chromosome remodeling factors
      PHA03169
      Location:574 → 759
      PHA03169; hypothetical protein; Provisional
      cd15559
      Location:402 → 444
      PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      cd15560
      Location:2735 → 2781
      PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
      pfam03157
      Location:2206 → 2515
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam13868
      Location:2529 → 2645
      TPH; Trichohyalin-plectin-homology domain
      pfam15613
      Location:466 → 534
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    19. XM_063269219.1 → XP_063125289.1  nucleosome-remodeling factor subunit BPTF isoform X14

      UniProtKB/TrEMBL
      A0A0G2K7N8

    20. XM_063269220.1 → XP_063125290.1  nucleosome-remodeling factor subunit BPTF isoform X16

      UniProtKB/TrEMBL
      A0A0G2K7N8
    Nucleotide Protein Strain
    Heading Accession and Version

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