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    INTS4P1 integrator complex subunit 4 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 285905, updated on 10-Dec-2024

    Summary

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    Official Symbol
    INTS4P1provided by HGNC
    Official Full Name
    integrator complex subunit 4 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:21925
    See related
    Ensembl:ENSG00000290545 AllianceGenome:HGNC:21925
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    INTS4L1
    Expression
    Ubiquitous expression in testis (RPKM 4.2), appendix (RPKM 2.9) and 25 other tissues See more
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    Genomic context

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    See INTS4P1 in Genome Data Viewer
    Location:
    7q11.21
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (65141030..65234222)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (66347254..66440366)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (64601408..64694600)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene general transcription factor IIi pseudogene 14 Neighboring gene uncharacterized LOC124901662 Neighboring gene uncharacterized LOC124901661 Neighboring gene NANOG hESC enhancer GRCh37_chr7:64691122-64691685 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr7:64703502-64704138 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:64704139-64704774 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:64710613-64711206 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:64725505-64726052 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:64727679-64728213 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:64728214-64728747 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:64728796-64729410 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:64733992-64734579 Neighboring gene uncharacterized LOC105375334 Neighboring gene clustered mitochondria homolog pseudogene 7 Neighboring gene zinc finger protein 267 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • integrator complex subunit 4-like 1

    Clone Names

    • FLJ25037, MGC133166

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_146905.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC104073
      Related
      ENST00000587624.6

    2. NR_146906.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC104073

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      65141030..65234222
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      66347254..66440366
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_182596.1: Suppressed sequence

      Description
      NM_182596.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.

    2. NR_027393.1: Suppressed sequence

      Description
      NR_027393.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
    Nucleotide Protein
    Heading Accession and Version

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