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    WD-40 repeat family protein / beige-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819162, updated on 18-Sep-2024

    Summary

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    Official Full Name
    WD-40 repeat family protein / beige-like protein
    Primary source
    TAIR:AT2G45540
    Locus tag
    AT2G45540
    See related
    Araport:AT2G45540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17K2.7
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    33
    Sequence:
    Chromosome: 2; NC_003071.7 (18757489..18772906, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene AAA-type ATPase family protein Neighboring gene cytochrome P450, family 704, subfamily A, polypeptide 2 Neighboring gene coiled-coil protein Neighboring gene RING/U-box superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cytochrome P450, family 76, subfamily C, polypeptide 4 Neighboring gene cytochrome P450, family 76, subfamily C, polypeptide 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001202823.2
    NM_001337139.1
    NM_001337140.1
    NM_001337141.1
    NM_001337142.1
    NM_130116.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    WD-40 repeat family protein / beige-like protein
    NP_001189752.1
    • WD-40 repeat family protein / beige-related; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), Beige/BEACH (InterPro:IPR000409), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60920.1).
    NP_001318429.1
    • WD-40 repeat family protein / beige-related; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Beige/BEACH (InterPro:IPR000409), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60920.1); Has 15175 Blast hits to 9236 proteins in 536 species: Archae - 8; Bacteria - 4185; Metazoa - 4754; Fungi - 2919; Plants - 1203; Viruses - 0; Other Eukaryotes - 2106 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18757489..18772906 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337139.1 → NP_001318429.1  WD-40 repeat family protein / beige-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPX9

    2. NM_001202823.2 → NP_001189752.1  WD-40 repeat family protein / beige-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189752.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IG73, O64634
      UniProtKB/TrEMBL
      A0A178VPX9
      Conserved Domains (7) summary
      COG2319
      Location:2685 → 2904
      WD40; WD40 repeat [General function prediction only]
      pfam02138
      Location:2288 → 2564
      Beach; Beige/BEACH domain
      pfam14844
      Location:2164 → 2260
      PH_BEACH; PH domain associated with Beige/BEACH
      pfam15787
      Location:658 → 915
      DUF4704; Domain of unknown function (DUF4704)
      pfam16057
      Location:1989 → 2054
      DUF4800; Domain of unknown function (DUF4800)
      sd00039
      Location:2684 → 2721
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:2684 → 2871
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. NM_001337141.1 → NP_001325313.1  WD-40 repeat family protein / beige-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPX9

    4. NM_001337142.1 → NP_001325312.1  WD-40 repeat family protein / beige-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPX9

    5. NM_001337140.1 → NP_001325311.1  WD-40 repeat family protein / beige-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPX9

    6. NM_130116.4 → NP_182078.1  WD-40 repeat family protein / beige-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182078.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPX9
      Conserved Domains (7) summary
      COG2319
      Location:2630 → 2819
      WD40; WD40 repeat [General function prediction only]
      pfam02138
      Location:2233 → 2509
      Beach; Beige/BEACH domain
      pfam14844
      Location:2109 → 2205
      PH_BEACH; PH domain associated with Beige/BEACH
      pfam15787
      Location:658 → 938
      DUF4704; Domain of unknown function (DUF4704)
      pfam16057
      Location:1934 → 1999
      DUF4800; Domain of unknown function (DUF4800)
      sd00039
      Location:2629 → 2666
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:2629 → 2816
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IG73.1

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