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    DUF4 hypothetical protein (DOMAIN OF UNKNOWN FUNCTION 724 4) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819297, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DUF4
    Official Full Name
    hypothetical protein (DOMAIN OF UNKNOWN FUNCTION 724 4)
    Primary source
    TAIR:AT2G46840
    Locus tag
    AT2G46840
    See related
    Araport:AT2G46840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATDUF4; DOMAIN OF UNKNOWN FUNCTION 724 4; F19D11.12
    Summary
    Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
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    Genomic context

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    See DUF4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (19248971..19249909, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene photosystem I P subunit Neighboring gene circadian clock associated 1 Neighboring gene Protein kinase superfamily protein Neighboring gene pyrophosphorylase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of the nuclear protein gene AtDUF4 increases organ size in Arabidopsis thaliana and Brassica napus. Chen G, et al. J Genet Genomics, 2018 Aug 20. PMID 30172581
    2. Characterization of DUF724 gene family in Arabidopsis thaliana. Cao X, et al. Plant Mol Biol, 2010 Jan. PMID 19795213
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Overexpression of AtDUF4 increases plant organ size, possibly by influencing the expression of the cell wall-formation and auxin transporter genes that regulate cell size in Arabidopsis and the oilseed rape B. napus.
      Title: Overexpression of the nuclear protein gene AtDUF4 increases organ size in Arabidopsis thaliana and Brassica napus.
    2. AtDuf4 were found to express in the root tips.
      Title: Characterization of DUF724 gene family in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    NM_130251.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DOMAIN OF UNKNOWN FUNCTION 724 4)
    NP_182207.1
    • DOMAIN OF UNKNOWN FUNCTION 724 4 (DUF4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 5 (TAIR:AT2G47220.1); Has 77 Blast hits to 77 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19248971..19249909 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130251.2 → NP_182207.1  hypothetical protein (DOMAIN OF UNKNOWN FUNCTION 724 4) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182207.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81039
      UniProtKB/TrEMBL
      A0A178VVQ8, A0A5S9X7K5
      Conserved Domains (1) summary
      pfam05266
      Location:63 → 189
      DUF724; Protein of unknown function (DUF724)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O81039.1

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