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    DEG3 DegP protease 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842874, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DEG3
    Official Full Name
    DegP protease 3
    Primary source
    TAIR:AT1G65630
    Locus tag
    AT1G65630
    See related
    Araport:AT1G65630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DegP protease 3; DegP3; degradation of periplasmic proteins 3; F1E22.1
    Summary
    Encodes a putative DegP protease.
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    Genomic context

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    See DEG3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (24406461..24409068, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Six-hairpin glycosidases superfamily protein Neighboring gene Lateral organ boundaries (LOB) domain family protein Neighboring gene DegP protease 4 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within proteolysis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DegP protease 3
    NP_564856.1
    • DegP protease 3 (DegP3); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, leaf, stamen; EXPRESSED DURING: LP.06 six leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 10 (TAIR:AT5G36950.1); Has 14044 Blast hits to 14031 proteins in 2490 species: Archae - 101; Bacteria - 10011; Metazoa - 289; Fungi - 18; Plants - 375; Viruses - 0; Other Eukaryotes - 3250 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24406461..24409068 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105236.2 → NP_564856.1  DegP protease 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564856.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04480, Q9SHZ1
      UniProtKB/TrEMBL
      A0A654EL89
      Conserved Domains (3) summary
      COG0265
      Location:78 → 405
      DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
      pfam13365
      Location:123 → 260
      Trypsin_2; Trypsin-like peptidase domain
      cl00117
      Location:308 → 394
      PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SHZ1.1

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