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    Plant regulator RWP-RK family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816220, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plant regulator RWP-RK family protein
    Primary source
    TAIR:AT2G17150
    Locus tag
    AT2G17150
    See related
    Araport:AT2G17150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6P23.15; F6P23_15; NIN-like protein 1; NLP1
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (7466687..7471586, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene lysm domain GPI-anchored protein 2 precursor Neighboring gene isocitrate dehydrogenase subunit 2 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Interleukin-1 receptor-associated kinase 4 protein Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis NIN-like transcription factors have a central role in nitrate signalling. Konishi M, et al. Nat Commun, 2013. PMID 23511481
    2. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036284.3
    NM_001335539.1
    NM_001335540.1
    NM_001335541.1
    NM_001335542.1
    NM_127269.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables cis-regulatory region sequence-specific DNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Plant regulator RWP-RK family protein
    NP_001031361.2
    • Plant regulator RWP-RK family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT4G35270.1); Has 321 Blast hits to 312 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 319; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_179306.2
    • Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT4G35270.1); Has 626 Blast hits to 586 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 557; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7466687..7471586 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127269.3 → NP_179306.2  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179306.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56XE7, Q8H111
      UniProtKB/TrEMBL
      A0A654ETI3
      Conserved Domains (3) summary
      cd06407
      Location:812 → 893
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:608 → 656
      RWP-RK; RWP-RK domain
      pfam13185
      Location:370 → 459
      GAF_2; GAF domain

    2. NM_001335541.1 → NP_001324422.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B010
      Conserved Domains (1) summary
      pfam13185
      Location:370 → 459
      GAF_2; GAF domain

    3. NM_001335540.1 → NP_001324423.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B033

    4. NM_001335539.1 → NP_001324421.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B010
      Conserved Domains (1) summary
      pfam13185
      Location:370 → 459
      GAF_2; GAF domain

    5. NM_001335542.1 → NP_001324424.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56XE7, Q8H111
      UniProtKB/TrEMBL
      A0A654ETI3
      Conserved Domains (3) summary
      cd06407
      Location:812 → 893
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:608 → 656
      RWP-RK; RWP-RK domain
      pfam13185
      Location:370 → 459
      GAF_2; GAF domain

    6. NM_001036284.3 → NP_001031361.2  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031361.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H111
      Conserved Domains (1) summary
      pfam13185
      Location:367 → 456
      GAF_2; GAF domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H111.1

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