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    deneddylase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839753, updated on 18-Sep-2024

    Summary

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    Official Full Name
    deneddylase
    Primary source
    TAIR:AT1G28530
    Locus tag
    AT1G28530
    See related
    Araport:AT1G28530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ANGULATA 10; ANU10; F3M18.3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (10031985..10035638, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF626) Neighboring gene Optic atrophy 3 protein (OPA3) Neighboring gene vascular plant one zinc finger protein Neighboring gene uncharacterized protein Neighboring gene RAB GTPase homolog A1I Neighboring gene snRNA activating complex family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis ANGULATA10 is required for thylakoid biogenesis and mesophyll development. Casanova-Sáez R, et al. J Exp Bot, 2014 Jun. PMID 24663344, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ANGULATA10( AT1G28530) is required for thylakoid biogenesis and mesophyll development.
      Title: Arabidopsis ANGULATA10 is required for thylakoid biogenesis and mesophyll development.
    Submit: New GeneRIF Correction

    General gene information

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    NM_102621.4
    NM_202200.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within granum assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within palisade mesophyll development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within thylakoid membrane organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    deneddylase
    NP_174175.2
    • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_973929.2
    • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10031985..10035638 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202200.3 → NP_973929.2  deneddylase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973929.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAN9, Q3ED53, Q9SHP4

    2. NM_102621.4 → NP_174175.2  deneddylase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174175.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAN9, Q84TH8
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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