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    EXPA18 expansin A18 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842601, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EXPA18
    Official Full Name
    expansin A18
    Primary source
    TAIR:AT1G62980
    Locus tag
    AT1G62980
    See related
    Araport:AT1G62980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATEXP18; ATEXPA18; ATHEXP ALPHA 1.25; EXP18; EXPANSIN 18; expansin A18; F16P17.14; F16P17_14
    Summary
    Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
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    Genomic context

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    See EXPA18 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (23331563..23333246)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene uncharacterized protein Neighboring gene transmembrane protein, putative (DUF1191) Neighboring gene homeobox knotted-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expansins: ever-expanding numbers and functions. Lee Y, et al. Curr Opin Plant Biol, 2001 Dec. PMID 11641069
    2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104976.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within plant-type cell wall loosening NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in plant-type cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within unidimensional cell growth NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    expansin A18
    NP_176486.1
    • expansin A18 (EXPA18); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root hair, root; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A7 (TAIR:AT1G12560.1); Has 2180 Blast hits to 2177 proteins in 164 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 39; Plants - 2093; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23331563..23333246
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104976.5 → NP_176486.1  expansin A18 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176486.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LQ07
      UniProtKB/TrEMBL
      A0A5S9WNT9, Q0WT83
      Conserved Domains (1) summary
      PLN00193
      Location:10 → 256
      PLN00193; expansin-A; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LQ07.1

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