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    ER membrane protein, putative (DUF962) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843785, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ER membrane protein, putative (DUF962)
    Primary source
    TAIR:AT1G74440
    Locus tag
    AT1G74440
    See related
    Araport:AT1G74440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1M20.12; F1M20_12
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (27976502..27980456, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene ncRNA Neighboring gene fucosyltransferase 3 Neighboring gene ncRNA Neighboring gene myb domain protein 95 Neighboring gene ncRNA Neighboring gene BPS1-like protein (DUF793) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MHP1 and MHL generate odd-chain fatty acids from 2-hydroxy fatty acids in sphingolipids and are related to immunity in Arabidopsis thaliana. Ushio M, et al. Plant Sci, 2023 Nov. PMID 37619867
    2. Arabidopsis MHP1, a homologue of yeast Mpo1, is involved in ABA signaling. Zheng M, et al. Plant Sci, 2021 Mar. PMID 33568285
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001334650.1
    NM_106104.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables fatty acid alpha-dioxygenase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sphingolipid catabolic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ER membrane protein, putative (DUF962)
    NP_177584.1
    • Protein of unknown function (DUF962); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF962) (TAIR:AT1G18720.1); Has 608 Blast hits to 608 proteins in 290 species: Archae - 0; Bacteria - 318; Metazoa - 3; Fungi - 143; Plants - 86; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27976502..27980456 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106104.3 → NP_177584.1  ER membrane protein, putative (DUF962) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177584.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WUB2, A0A654EQF7, Q9CA70
      Conserved Domains (1) summary
      cl01879
      Location:7 → 193
      DUF962; Protein of unknown function (DUF962)

    2. NM_001334650.1 → NP_001322683.1  ER membrane protein, putative (DUF962) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WUB2, A0A654EQF7, Q9CA70
    Nucleotide Protein
    Heading Accession and Version

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