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    filament-like protein (DUF869) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844093, updated on 18-Sep-2024

    Summary

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    Official Full Name
    filament-like protein (DUF869)
    Primary source
    TAIR:AT1G77580
    Locus tag
    AT1G77580
    See related
    Araport:AT1G77580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5M16.17; T5M16_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (29144025..29147646, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Gln Neighboring gene Winged helix-turn-helix transcription repressor DNA-binding protein Neighboring gene long chain acyl-CoA synthetase 9 Neighboring gene ARM repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ubiquitin ligase PUB22 targets a subunit of the exocyst complex required for PAMP-triggered responses in Arabidopsis. Stegmann M, et al. Plant Cell, 2012 Nov. PMID 23170036, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_106406.2
    NM_202433.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    filament-like protein (DUF869)
    NP_177881.2
    • Plant protein of unknown function (DUF869); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G21810.1); Has 179109 Blast hits to 86523 proteins in 3458 species: Archae - 2679; Bacteria - 35310; Metazoa - 76898; Fungi - 14876; Plants - 11116; Viruses - 700; Other Eukaryotes - 37530 (source: NCBI BLink).
    NP_974162.1
    • Plant protein of unknown function (DUF869); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G21810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29144025..29147646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334787.1 → NP_001322978.1  filament-like protein (DUF869) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVP2, A0A654EUY8

    2. NM_001334786.1 → NP_001322979.1  filament-like protein (DUF869) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84WP8, Q9CAP9
      UniProtKB/TrEMBL
      A0A5S9WV82, A0A654EUY8
      Conserved Domains (1) summary
      pfam05911
      Location:79 → 683
      FPP; Filament-like plant protein, long coiled-coil

    3. NM_106406.2 → NP_177881.2  filament-like protein (DUF869) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177881.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CAP9
      Conserved Domains (2) summary
      COG1196
      Location:396 → 602
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05911
      Location:45 → 214
      FPP; Filament-like plant protein, long coiled-coil

    4. NM_202433.2 → NP_974162.1  filament-like protein (DUF869) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974162.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84WP8, Q9CAP9
      UniProtKB/TrEMBL
      A0A5S9WV82, A0A654EUY8
      Conserved Domains (1) summary
      pfam05911
      Location:79 → 683
      FPP; Filament-like plant protein, long coiled-coil
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CAP9.1

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