U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838471, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT1G18900
    Locus tag
    AT1G18900
    See related
    Araport:AT1G18900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14D16.2; F14D16_2
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (6528984..6532697)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Major facilitator superfamily protein Neighboring gene ncRNA Neighboring gene calcium-dependent protein kinase 1 Neighboring gene ncRNA Neighboring gene zinc ion binding protein Neighboring gene pseudo Neighboring gene Nodulin-like / Major Facilitator Superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. An Arabidopsis pentatricopeptide repeat protein, SUPPRESSOR OF VARIEGATION7, is required for FtsH-mediated chloroplast biogenesis. Liu X, et al. Plant Physiol, 2010 Dec. PMID 20935174, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001198101.1
    NM_001332378.1
    NM_202131.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_001185030.1
    • Pentatricopeptide repeat (PPR) superfamily protein; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G74750.1).
    NP_001319039.1
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G74750.1); Has 53451 Blast hits to 14715 proteins in 301 species: Archae - 4; Bacteria - 60; Metazoa - 600; Fungi - 788; Plants - 50339; Viruses - 0; Other Eukaryotes - 1660 (source: NCBI BLink).
    NP_973860.1
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G74750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6528984..6532697
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101747.3 → NP_173324.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173324.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYP6, Q9LME0
      UniProtKB/TrEMBL
      A0A178WKC2, A0A654EB44
      Conserved Domains (3) summary
      smart00463
      Location:758 → 839
      SMR; Small MutS-related domain
      PLN03218
      Location:354 → 665
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:401 → 428
      PPR; PPR repeat [structural motif]

    2. NM_001332378.1 → NP_001319039.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYP6, Q9LME0
      UniProtKB/TrEMBL
      A0A178WKC2, A0A654EB44
      Conserved Domains (3) summary
      smart00463
      Location:758 → 839
      SMR; Small MutS-related domain
      PLN03218
      Location:354 → 665
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:401 → 428
      PPR; PPR repeat [structural motif]

    3. NM_001198101.1 → NP_001185030.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185030.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKC2, F4IDY2
      Conserved Domains (5) summary
      smart00463
      Location:758 → 839
      SMR; Small MutS-related domain
      TIGR00756
      Location:505 → 538
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:401 → 428
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:393 → 426
      PPR_1; PPR repeat
      pfam13041
      Location:467 → 516
      PPR_2; PPR repeat family

    4. NM_202131.1 → NP_973860.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973860.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYP6, Q9LME0
      UniProtKB/TrEMBL
      A0A178WKC2, A0A654EB44
      Conserved Domains (3) summary
      smart00463
      Location:758 → 839
      SMR; Small MutS-related domain
      PLN03218
      Location:354 → 665
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:401 → 428
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GYP6.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.