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    plant viral-response family protein (DUF716) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821158, updated on 18-Sep-2024

    Summary

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    Official Full Name
    plant viral-response family protein (DUF716)
    Primary source
    TAIR:AT3G01360
    Locus tag
    AT3G01360
    See related
    Araport:AT3G01360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T13O15.14
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (136399..138799, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Major facilitator superfamily protein Neighboring gene ncRNA Neighboring gene CRM family member 2 Neighboring gene sulfatase and phosphatidylinositolglycan class N domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035540.3
    NM_111002.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    plant viral-response family protein (DUF716)
    NP_001030617.1
    • Family of unknown function (DUF716); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF716) (TAIR:AT1G55230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_186785.1
    • Family of unknown function (DUF716); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF716) (TAIR:AT1G55230.1); Has 208 Blast hits to 208 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      136399..138799 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111002.2 → NP_186785.1  plant viral-response family protein (DUF716) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186785.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F8A4, Q9SRI3
      Conserved Domains (1) summary
      pfam04819
      Location:125 → 260
      DUF716; Family of unknown function (DUF716)

    2. NM_001035540.3 → NP_001030617.1  plant viral-response family protein (DUF716) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030617.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F8A4, Q9SRI3
      Conserved Domains (1) summary
      pfam04819
      Location:125 → 260
      DUF716; Family of unknown function (DUF716)
    Nucleotide Protein
    Heading Accession and Version

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