TH9 thioredoxin H-type 9 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: TH9
Official Full Name: thioredoxin H-type 9
Primary source: TAIR:AT3G08710
Locus tag: AT3G08710
See related: Araport:AT3G08710
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ATH9; thioredoxin H-type 9; THIOREDOXIN TYPE H 9; TRX H9
Summary: Associated to plasma membrane. Moves cell to cell, suggesting a role in intercellular communication.
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Genomic context

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See TH9 in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 5

Sequence:: Chromosome: 3; NC_003074.8 (2645078..2646604)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

a phenotype of dwarf plants with short roots and small yellowish leaves for AtTrx h9, a member of the Arabidopsis Trx h family was identified. Trx h9 was found to be associated with the plasma membrane and to move from cell to cell.
Title: A membrane-associated thioredoxin required for plant growth moves from cell to cell, suggestive of a role in intercellular communication.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001084655.2

Supported by ESTs:

NM_001337765.1

Supported by ESTs:

NM_111705.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables oxidoreductase activity	IDA Inferred from Direct Assay more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell communication	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	ISM Inferred from Sequence Model more info
located_in cytosol	HDA more info	PubMed
located_in plasma membrane	HDA more info	PubMed
located_in plasma membrane	IDA Inferred from Direct Assay more info	PubMed
located_in plastid	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: thioredoxin H-type 9

NP_001078124.1

thioredoxin H-type 9 (TH9); INVOLVED IN: cell communication; LOCATED IN: cytosol, nucleus, plasma membrane, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G56420.1); Has 16223 Blast hits to 16135 proteins in 2903 species: Archae - 224; Bacteria - 9339; Metazoa - 1540; Fungi - 676; Plants - 1413; Viruses - 3; Other Eukaryotes - 3028 (source: NCBI BLink).

NP_187483.1

thioredoxin H-type 9 (TH9); INVOLVED IN: N-terminal protein myristoylation, cell communication; LOCATED IN: cytosol, nucleus, plasma membrane, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G56420.1); Has 16223 Blast hits to 16135 proteins in 2903 species: Archae - 224; Bacteria - 9339; Metazoa - 1540; Fungi - 676; Plants - 1413; Viruses - 3; Other Eukaryotes - 3028 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

2645078..2646604

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_111705.4 → NP_187483.1 thioredoxin H-type 9 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_187483.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9C9Y6

UniProtKB/TrEMBL

A0A178V9N0, A0A5S9XAG3

Conserved Domains (1) summary

cd02947
Location:32 → 126

TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...
NM_001084655.2 → NP_001078124.1 thioredoxin H-type 9 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001078124.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9C9Y6

UniProtKB/TrEMBL

A0A178V9N0, A0A5S9XAG3

Conserved Domains (1) summary

cd02947
Location:32 → 126

TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...
NM_001337765.1 → NP_001325992.1 thioredoxin H-type 9 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9C9Y6

UniProtKB/TrEMBL

A0A178V9N0, A0A5S9XAG3

Conserved Domains (1) summary

cd02947
Location:32 → 126

TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...