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    WW domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820517, updated on 18-Sep-2024

    Summary

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    Official Full Name
    WW domain-containing protein
    Primary source
    TAIR:AT3G13225
    Locus tag
    AT3G13225
    See related
    Araport:AT3G13225
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (4258667..4262916, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene serine-rich protein-like protein Neighboring gene ncRNA Neighboring gene regulatory protein RecX family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001161141.2
    NM_001338038.1
    NM_112164.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    WW domain-containing protein
    NP_001154613.1
    • WW domain-containing protein; CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); Has 1723 Blast hits to 1069 proteins in 210 species: Archae - 2; Bacteria - 74; Metazoa - 564; Fungi - 222; Plants - 86; Viruses - 6; Other Eukaryotes - 769 (source: NCBI BLink).
    NP_187930.2
    • WW domain-containing protein; CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); Has 4868 Blast hits to 3360 proteins in 446 species: Archae - 8; Bacteria - 476; Metazoa - 1490; Fungi - 707; Plants - 530; Viruses - 89; Other Eukaryotes - 1568 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4258667..4262916 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001161141.2 → NP_001154613.1  WW domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154613.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XC77, A0A654FGW9, F4JC80
      Conserved Domains (3) summary
      pfam04554
      Location:529 → 572
      Extensin_2; Extensin-like region
      pfam00397
      Location:860 → 890
      WW; WW domain
      pfam06346
      Location:537 → 571
      Drf_FH1; Formin Homology Region 1

    2. NM_112164.3 → NP_187930.2  WW domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187930.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8S8, F4JC81
      Conserved Domains (3) summary
      pfam04554
      Location:408 → 451
      Extensin_2; Extensin-like region
      pfam00397
      Location:739 → 769
      WW; WW domain
      pfam06346
      Location:416 → 450
      Drf_FH1; Formin Homology Region 1

    3. NM_001338038.1 → NP_001327773.1  WW domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8S8, F4JC81
    Nucleotide Protein
    Heading Accession and Version

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