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    SON1 F-box and associated interaction domains-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816238, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SON1
    Official Full Name
    F-box and associated interaction domains-containing protein
    Primary source
    TAIR:AT2G17310
    Locus tag
    AT2G17310
    See related
    Araport:AT2G17310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5J6.7; F5J6_7; SUPPRESSOR OF NIM1-1 1
    Summary
    Encodes an F-Box protein that regulates a novel induced defense response independent of both salicylic acid and systemic acquired resistance
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    Genomic context

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    See SON1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (7531194..7532412)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene F-box/LRR protein Neighboring gene pantothenate kinase Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis SON1 is an F-box protein that regulates a novel induced defense response independent of both salicylic acid and systemic acquired resistance. Kim HS, et al. Plant Cell, 2002 Jul. PMID 12119368, Free PMC Article
    2. Arabidopsis proteins important for modulating defense responses to Pseudomonas syringae that secrete HopW1-1. Lee MW, et al. Plant J, 2008 May. PMID 18266921
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. NIM1 is partially required for Pseudomonas syringae HopW1-1-induced disease resistance.
      Title: Arabidopsis proteins important for modulating defense responses to Pseudomonas syringae that secrete HopW1-1.
    Submit: New GeneRIF Correction

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein ubiquitination ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    acts_upstream_of_or_within response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box and associated interaction domains-containing protein
    NP_179323.1
    • SUPPRESSOR OF NIM1-1 1 (SON1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G17710.1); Has 1389 Blast hits to 1359 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1389; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7531194..7532412
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127286.2 → NP_179323.1  F-box and associated interaction domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179323.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LL17
      UniProtKB/TrEMBL
      A0A5S9WYN4
      Conserved Domains (3) summary
      smart00256
      Location:3 → 43
      FBOX; A Receptor for Ubiquitination Targets
      pfam07734
      Location:200 → 361
      FBA_1; F-box associated
      TIGR01640
      Location:98 → 339
      F_box_assoc_1; F-box protein interaction domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LL17.1

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