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    hypothetical protein (DUF506) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821871, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF506)
    Primary source
    TAIR:AT3G22970
    Locus tag
    AT3G22970
    See related
    Araport:AT3G22970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (8152038..8154149)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Pyruvate kinase family protein Neighboring gene Paired amphipathic helix (PAH2) superfamily protein Neighboring gene ncRNA Neighboring gene Ribosomal protein S5/Elongation factor G/III/V family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis J-protein J20 delivers the first enzyme of the plastidial isoprenoid pathway to protein quality control. Pulido P, et al. Plant Cell, 2013 Oct. PMID 24104567, Free PMC Article
    2. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Miscellaneous features

    • Loc: 8152153-8152257 AT3G22970.uORF1
    NM_001035666.2
    NM_113197.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF506)
    NP_001030743.1
    • Protein of unknown function (DUF506); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT4G14620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_188937.1
    • Protein of unknown function (DUF506); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT4G14620.1); Has 397 Blast hits to 394 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 395; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8152038..8154149
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113197.4 → NP_188937.1  hypothetical protein (DUF506) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188937.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q84WI2, Q9LIJ8
      Conserved Domains (1) summary
      pfam04720
      Location:81 → 291
      PDDEXK_6; PDDEXK-like family of unknown function

    2. NM_001035666.2 → NP_001030743.1  hypothetical protein (DUF506) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030743.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J2T8
      Conserved Domains (1) summary
      pfam04720
      Location:22 → 180
      PDDEXK_6; PDDEXK-like family of unknown function
    Nucleotide Protein
    Heading Accession and Version

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