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    Cation efflux family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820384, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cation efflux family protein
    Primary source
    TAIR:AT3G12100
    Locus tag
    AT3G12100
    See related
    Araport:AT3G12100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    metal transport protein 5; MTP5
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (3854487..3857319, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene trichome birefringence-like protein (DUF828) Neighboring gene RAB geranylgeranyl transferase beta subunit 2 Neighboring gene GTP-binding family protein Neighboring gene tetraspanin6 Neighboring gene actin-11 Neighboring gene fatty acid desaturase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A high molecular mass zinc transporter MTP12 forms a functional heteromeric complex with MTP5 in the Golgi in Arabidopsis thaliana. Fujiwara T, et al. FEBS J, 2015 May. PMID 25732056
    2. Compensatory mutations in predicted metal transporters modulate auxin conjugate responsiveness in Arabidopsis. Rampey RA, et al. G3 (Bethesda), 2013 Jan. PMID 23316445, Free PMC Article
    3. Nematode-induced changes of transporter gene expression in Arabidopsis roots. Hammes UZ, et al. Mol Plant Microbe Interact, 2005 Dec. PMID 16478044
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MTP5 and IAR1 transport metals in an antagonistic fashion to regulate metal homeostasis.
      Title: Compensatory mutations in predicted metal transporters modulate auxin conjugate responsiveness in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001337974.1
    NM_112045.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular zinc ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to nematode HEP PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cation efflux family protein
    NP_001319528.1
    • Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT2G04620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_187817.2
    • Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT2G04620.1); Has 6181 Blast hits to 5813 proteins in 1885 species: Archae - 127; Bacteria - 3950; Metazoa - 1047; Fungi - 487; Plants - 277; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3854487..3857319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112045.5 → NP_187817.2  Cation efflux family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187817.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6ICY4, Q9C7C2, Q9LH56
      UniProtKB/TrEMBL
      A0A5S9XBK3, A0A654F6B2, Q0WSX7
      Conserved Domains (2) summary
      COG1230
      Location:112 → 393
      CzcD; Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
      pfam01545
      Location:128 → 312
      Cation_efflux; Cation efflux family

    2. NM_001337974.1 → NP_001319528.1  Cation efflux family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VC51, F4J8M5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ICY4.1

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