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    RbcX1 Chaperonin-like RbcX protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825753, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RbcX1
    Official Full Name
    Chaperonin-like RbcX protein
    Primary source
    TAIR:AT4G04330
    Locus tag
    AT4G04330
    See related
    Araport:AT4G04330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtRbcX1; homologue of cyanobacterial RbcX 1; T19B17.5; T19B17_5
    Summary
    Encodes a chloroplast thylakoid localized RbcX protein that acts as a chaperone in the folding of Rubisco.
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    Genomic context

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    See RbcX1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (2116553..2118617, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene malonyl-CoA decarboxylase family protein Neighboring gene ERD (early-responsive to dehydration stress) family protein Neighboring gene tRNA synthetase class I (I, L, M and V) family protein Neighboring gene transmembrane protein, putative (DUF1068)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Initial characteristics of RbcX proteins from Arabidopsis thaliana. Kolesiński P, et al. Plant Mol Biol, 2011 Nov. PMID 21922322, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_116671.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein folding chaperone IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within chaperone-mediated protein folding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to salt stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in ribulose bisphosphate carboxylase complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast thylakoid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Chaperonin-like RbcX protein
    NP_567263.1
    • Chaperonin-like RbcX protein; CONTAINS InterPro DOMAIN/s: Chaperonin-like RbcX (InterPro:IPR003435); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      2116553..2118617 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116671.3 → NP_567263.1  Chaperonin-like RbcX protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567263.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94AU9, Q9XEA2
      UniProtKB/TrEMBL
      A0A5S9XQA5, A0A654FLY4
      Conserved Domains (1) summary
      pfam02341
      Location:61 → 164
      RcbX; RbcX protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94AU9.1

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