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    P-loop containing nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828913, updated on 18-Sep-2024

    Summary

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    Official Full Name
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Primary source
    TAIR:AT4G28000
    Locus tag
    AT4G28000
    See related
    Araport:AT4G28000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T13J8.110; T13J8_110
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    16
    Sequence:
    Chromosome: 4; NC_003075.7 (13925338..13929527)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene trichohyalin-like protein (DUF3444) Neighboring gene YGGT family protein Neighboring gene NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene tRNA-thr(GGU) m(6)t(6)A37 methyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    NP_194529.4
    • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G52882.1); Has 39856 Blast hits to 37451 proteins in 3236 species: Archae - 1544; Bacteria - 17865; Metazoa - 4891; Fungi - 3526; Plants - 3328; Viruses - 34; Other Eukaryotes - 8668 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13925338..13929527
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341899.1 → NP_001328776.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5P0, A0A5S9XWY4, A0A654FTF6
      Conserved Domains (2) summary
      pfam17862
      Location:709 → 752
      AAA_lid_3; AAA+ lid domain
      cl38936
      Location:521 → 686
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. NM_118938.4 → NP_194529.4  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194529.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XWY4, A0A654FTF6, F4JKF8
      Conserved Domains (2) summary
      smart00382
      Location:553 → 687
      AAA; ATPases associated with a variety of cellular activities
      pfam00004
      Location:555 → 686
      AAA; ATPase family associated with various cellular activities (AAA)

    3. NM_001341900.1 → NP_001328775.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5P1, A0A5S9XWY4, A0A654FTF6
    Nucleotide Protein
    Heading Accession and Version

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