RNA-binding protein-like protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: RNA-binding protein-like protein
Primary source: TAIR:AT4G28990
Locus tag: AT4G28990
See related: Araport:AT4G28990
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F19B15.20; F19B15_20
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 5

Sequence:: Chromosome: 4; NC_003075.7 (14290947..14293199)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001160800.1

Supported by ESTs:

NM_119043.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: RNA-binding protein-like protein

NP_001154272.1

RNA-binding protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); Has 1307 Blast hits to 1081 proteins in 160 species: Archae - 0; Bacteria - 36; Metazoa - 556; Fungi - 137; Plants - 464; Viruses - 16; Other Eukaryotes - 98 (source: NCBI BLink).

NP_194628.1

RNA-binding protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); Has 2519 Blast hits to 1997 proteins in 235 species: Archae - 0; Bacteria - 103; Metazoa - 1014; Fungi - 334; Plants - 809; Viruses - 36; Other Eukaryotes - 223 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

14290947..14293199

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_119043.3 → NP_194628.1 RNA-binding protein-like protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_194628.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UXJ3, Q8GWD9, Q9SZD0

Conserved Domains (1) summary

sd00029
Location:158 → 179

zf-RanBP2; RanBP2-type Zn finger [structural motif]
NM_001160800.1 → NP_001154272.1 RNA-binding protein-like protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001154272.1

Status: REVIEWED

UniProtKB/TrEMBL

F4JM55, Q8GWD9

Conserved Domains (3) summary

smart00547
Location:204 → 228

ZnF_RBZ; Zinc finger domain

sd00029
Location:206 → 227

zf-RanBP2; RanBP2-type Zn finger [structural motif]

pfam13968
Location:61 → 120

DUF4220; Domain of unknown function (DUF4220)