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    DJ1C Class I glutamine amidotransferase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829548, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DJ1C
    Official Full Name
    Class I glutamine amidotransferase-like superfamily protein
    Primary source
    TAIR:AT4G34020
    Locus tag
    AT4G34020
    See related
    Araport:AT4G34020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtDJ1C; DJ-1 homolog C; DJ-1c; F28A23.220
    Summary
    Encodes a homolog of animal DJ-1 superfamily protein. In the A. thaliana genome, three genes encoding close homologs of human DJ-1 were identified AT3G14990 (DJ1A), AT1G53280 (DJ1B) and AT4G34020 (DJ1C). Among the three homologs, DJ1C is essential for chloroplast development and viability.
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    Genomic context

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    See DJ1C in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (16298262..16300999, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene membrane insertase, putative (DUF1685) Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene abscisic acid responsive elements-binding factor 3 Neighboring gene 3-methylcrotonyl-CoA carboxylase Neighboring gene tRNA-Arg

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A plant DJ-1 homolog is essential for Arabidopsis thaliana chloroplast development. Lin J, et al. PLoS One, 2011. PMID 21886817, Free PMC Article
    2. Novel glyoxalases from Arabidopsis thaliana. Kwon K, et al. FEBS J, 2013 Jul. PMID 23651081
    3. The Arabidopsis DJ-1a protein confers stress protection through cytosolic SOD activation. Xu XM, et al. J Cell Sci, 2010 May 15. PMID 20406884
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036710.1
    NM_001342247.1
    NM_001342248.1
    NM_119563.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Class I glutamine amidotransferase-like superfamily protein
    NP_001031787.1
    • Class I glutamine amidotransferase-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DJ-1 (InterPro:IPR006287), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT1G53280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_195128.2
    • Class I glutamine amidotransferase-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DJ-1 (InterPro:IPR006287), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT1G53280.1); Has 6311 Blast hits to 3877 proteins in 1442 species: Archae - 143; Bacteria - 5053; Metazoa - 521; Fungi - 51; Plants - 234; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16298262..16300999 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119563.5 → NP_195128.2  Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195128.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DHC7, O49502, Q8VY09
      UniProtKB/TrEMBL
      A0A5S9Y0M3
      Conserved Domains (3) summary
      cd03135
      Location:289 → 452
      GATase1_DJ-1; Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1
      TIGR01383
      Location:85 → 258
      not_thiJ; DJ-1 family protein
      pfam01965
      Location:84 → 248
      DJ-1_PfpI; DJ-1/PfpI family

    2. NM_001036710.1 → NP_001031787.1  Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031787.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y0M3
      Conserved Domains (3) summary
      cd03135
      Location:254 → 417
      GATase1_DJ-1; Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1
      TIGR01383
      Location:253 → 429
      not_thiJ; DJ-1 family protein
      pfam01965
      Location:86 → 213
      DJ-1_PfpI; DJ-1/PfpI family

    3. NM_001342247.1 → NP_001329000.1  Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B6E1

    4. NM_001342248.1 → NP_001329001.1  Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B6E1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VY09.1

    Gene LinkOut

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