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    TAF8 TBP-associated factor 8 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829584, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TAF8
    Official Full Name
    TBP-associated factor 8
    Primary source
    TAIR:AT4G34340
    Locus tag
    AT4G34340
    See related
    Araport:AT4G34340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10M10.110; F10M10_110; TBP-associated factor 8
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    Genomic context

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    See TAF8 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (16426483..16428013, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene transmembrane protein, putative (DUF677) Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Three functionally redundant plant-specific paralogs are core subunits of the SAGA histone acetyltransferase complex in Arabidopsis. Wu CJ, et al. Mol Plant, 2021 Jul 5. PMID 33737195
    2. Yeast two-hybrid map of Arabidopsis TFIID. Lawit SJ, et al. Plant Mol Biol, 2007 May. PMID 17340043
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_119599.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    TBP-associated factor 8
    NP_567964.1
    • TBP-associated factor 8 (TAF8); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Bromodomain transcription factor (InterPro:IPR006565), Transcription factor TFIID, subunit 8, C-terminal (InterPro:IPR019473); BEST Arabidopsis thaliana protein match is: Bromodomain transcription factor (TAIR:AT5G15570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16426483..16428013 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342279.1 → NP_001328816.1  TBP-associated factor 8 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5T7

    2. NM_119599.1 → NP_567964.1  TBP-associated factor 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567964.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFR3, Q9SYZ9
      UniProtKB/TrEMBL
      A0A178USC8
      Conserved Domains (2) summary
      cd08049
      Location:164 → 216
      TAF8; TATA Binding Protein (TBP) Associated Factor 8
      pfam07524
      Location:24 → 100
      Bromo_TP; Bromodomain associated
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SYZ9.1

    Gene LinkOut

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