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    SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824074, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein
    Primary source
    TAIR:AT3G49130
    Locus tag
    AT3G49130
    See related
    Araport:AT3G49130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2K15.1
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (18210453..18211708)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene peroxidase CB Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_114772.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein
    NP_190482.1
    • SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT5G06520.1); Has 267 Blast hits to 204 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 8; Plants - 161; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18210453..18211708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114772.1 → NP_190482.1  SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190482.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FHL0, Q9SMU9
      Conserved Domains (2) summary
      pfam01805
      Location:61 → 111
      Surp; Surp module
      cl02715
      Location:223 → 258
      Surp; Surp module
    Nucleotide Protein
    Heading Accession and Version

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