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    JRG21 jasmonate-regulated gene 21 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824763, updated on 18-Sep-2024

    Summary

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    Official Symbol
    JRG21
    Official Full Name
    jasmonate-regulated gene 21
    Primary source
    TAIR:AT3G55970
    Locus tag
    AT3G55970
    See related
    Araport:AT3G55970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATJRG21; jasmonate-regulated gene 21
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    Genomic context

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    See JRG21 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (20766735..20769410, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene CRINKLY4 related 3 Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene salt-inducible zinc finger 1 Neighboring gene trichome birefringence-like protein (DUF828)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Jasmonic Acid Oxidase 2 Hydroxylates Jasmonic Acid and Represses Basal Defense and Resistance Responses against Botrytis cinerea Infection. Smirnova E, et al. Mol Plant, 2017 Sep 12. PMID 28760569
    2. Arabidopsis JASMONATE-INDUCED OXYGENASES down-regulate plant immunity by hydroxylation and inactivation of the hormone jasmonic acid. Caarls L, et al. Proc Natl Acad Sci U S A, 2017 Jun 13. PMID 28559313, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_001339761.1
    NM_115455.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables jasmonic acid hydrolase IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables jasmonic acid hydrolase IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of defense response to insect IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of jasmonic acid mediated signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    jasmonate-regulated gene 21
    NP_191156.1
    • jasmonate-regulated gene 21 (JRG21); FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G05600.1); Has 8809 Blast hits to 8750 proteins in 1005 species: Archae - 0; Bacteria - 1115; Metazoa - 109; Fungi - 1073; Plants - 4993; Viruses - 0; Other Eukaryotes - 1519 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20766735..20769410 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115455.5 → NP_191156.1  jasmonate-regulated gene 21 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191156.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LY48
      UniProtKB/TrEMBL
      A0A178V764, A0A5S9XL77
      Conserved Domains (1) summary
      PLN02393
      Location:1 → 363
      PLN02393; leucoanthocyanidin dioxygenase like protein

    2. NM_001339761.1 → NP_001325581.1  jasmonate-regulated gene 21 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLN9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LY48.1

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