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    Tubulin binding cofactor C domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824958, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tubulin binding cofactor C domain-containing protein
    Primary source
    TAIR:AT3G57890
    Locus tag
    AT3G57890
    See related
    Araport:AT3G57890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (21438075..21442085)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene sumo conjugation enzyme 1 Neighboring gene Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein Neighboring gene import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein Neighboring gene D111/G-patch domain-containing protein Neighboring gene squamosa promoter binding protein-like 15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203191.1
    NM_115651.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tubulin binding cofactor C domain-containing protein
    NP_001190120.1
    • Tubulin binding cofactor C domain-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CARP motif (InterPro:IPR006599), C-CAP/cofactor C-like domain (InterPro:IPR017901), Tubulin binding cofactor C (InterPro:IPR012945); BEST Arabidopsis thaliana protein match is: C-CAP/cofactor C-like domain-containing protein (TAIR:AT2G42230.2).
    NP_567059.1
    • Tubulin binding cofactor C domain-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CARP motif (InterPro:IPR006599), C-CAP/cofactor C-like domain (InterPro:IPR017901), Tubulin binding cofactor C (InterPro:IPR012945); BEST Arabidopsis thaliana protein match is: C-CAP/cofactor C-like domain-containing protein (TAIR:AT2G42230.2); Has 385 Blast hits to 385 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21438075..21442085
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115651.3 → NP_567059.1  Tubulin binding cofactor C domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567059.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FIS9, Q940S9
      Conserved Domains (1) summary
      pfam07986
      Location:337 → 451
      TBCC; Tubulin binding cofactor C

    2. NM_001203191.1 → NP_001190120.1  Tubulin binding cofactor C domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190120.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FIS9, F4J4K6
      Conserved Domains (1) summary
      pfam07986
      Location:373 → 487
      TBCC; Tubulin binding cofactor C
    Nucleotide Protein
    Heading Accession and Version

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