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    SPL12 squamosa promoter-binding protein-like 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825173, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SPL12
    Official Full Name
    squamosa promoter-binding protein-like 12
    Primary source
    TAIR:AT3G60030
    Locus tag
    AT3G60030
    See related
    Araport:AT3G60030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    squamosa promoter-binding protein-like 12
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    Genomic context

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    See SPL12 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (22165580..22169984, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene SKP1-like 13 Neighboring gene SKP1-like 5 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. Yamasaki K, et al. FEBS Lett, 2006 Apr 3. PMID 16554053
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_115866.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    squamosa promoter-binding protein-like 12
    NP_191562.1
    • squamosa promoter-binding protein-like 12 (SPL12); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 1 (TAIR:AT2G47070.1); Has 969 Blast hits to 908 proteins in 50 species: Archae - 0; Bacteria - 2; Metazoa - 21; Fungi - 0; Plants - 938; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22165580..22169984 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115866.4 → NP_191562.1  squamosa promoter-binding protein-like 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191562.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9S7P5
      UniProtKB/TrEMBL
      A0A178VGF0, A0A5S9XMD6, C0SVF5
      Conserved Domains (3) summary
      sd00045
      Location:718 → 755
      ANK; ANK repeat [structural motif]
      pfam03110
      Location:127 → 201
      SBP; SBP domain
      cl39094
      Location:718 → 816
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S7P5.1

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