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    ATP-dependent caseinolytic (Clp) protease/crotonase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825222, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ATP-dependent caseinolytic (Clp) protease/crotonase family protein
    Primary source
    TAIR:AT3G60510
    Locus tag
    AT3G60510
    See related
    Araport:AT3G60510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    14
    Sequence:
    Chromosome: 3; NC_003074.8 (22356754..22360276, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene StAR lipid transfer-like protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene 3'-5'-exoribonuclease family protein Neighboring gene zinc ion-binding protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_001035825.2
    NM_001203215.1
    NM_115915.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ATP-dependent caseinolytic (Clp) protease/crotonase family protein
    NP_001030902.1
    • ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT4G31810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001190144.1
    • ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT4G31810.1).
    NP_191610.3
    • ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT4G31810.1); Has 26588 Blast hits to 26575 proteins in 2095 species: Archae - 389; Bacteria - 18495; Metazoa - 1137; Fungi - 715; Plants - 561; Viruses - 0; Other Eukaryotes - 5291 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22356754..22360276 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115915.5 → NP_191610.3  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191610.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q2V3M8, Q5XF59, Q9M208
      UniProtKB/TrEMBL
      A0A178VLW9, A0A5S9XMT5, A0A654FJJ3
      Conserved Domains (1) summary
      PLN02157
      Location:1 → 401
      PLN02157; 3-hydroxyisobutyryl-CoA hydrolase-like protein

    2. NM_001035825.2 → NP_001030902.1  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030902.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5XF59
      Conserved Domains (1) summary
      cl23717
      Location:1 → 316
      crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

    3. NM_001203215.1 → NP_001190144.1  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190144.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FJJ3, F4JBV0
      Conserved Domains (2) summary
      PLN02157
      Location:1 → 426
      PLN02157; 3-hydroxyisobutyryl-CoA hydrolase-like protein
      cl23717
      Location:1 → 425
      crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5XF59.1

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