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    GPI-anchored protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831711, updated on 18-Sep-2024

    Summary

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    Official Full Name
    GPI-anchored protein
    Primary source
    TAIR:AT5G01280
    Locus tag
    AT5G01280
    See related
    Araport:AT5G01280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    BASIC PROLINE-RICH PROTEIN3; BPP3; T10O8.1
    Summary
    Encodes a microtubule-associated protein.
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (113921..116411, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Carbohydrate-binding-like fold Neighboring gene carboxyl-terminal domain (ctd) phosphatase-like 2 Neighboring gene mRNA capping enzyme family protein Neighboring gene PEBP (phosphatidylethanolamine-binding protein) family protein Neighboring gene transcription factor bHLH140-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Basic Proline-Rich Protein-Mediated Microtubules Are Essential for Lobe Growth and Flattened Cell Geometry. Wong JH, et al. Plant Physiol, 2019 Dec. PMID 31601644, Free PMC Article
    2. Purification and characterization of novel microtubule-associated proteins from Arabidopsis cell suspension cultures. Hamada T, et al. Plant Physiol, 2013 Dec. PMID 24134884, Free PMC Article
    3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001342581.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cortical microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of microtubule associated complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    GPI-anchored protein
    NP_001318449.1
    • BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      113921..116411 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120206.3 → NP_195748.1  GPI-anchored protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195748.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FBC6, Q9LFA8
      Conserved Domains (1) summary
      PHA03247
      Location:156 → 273
      PHA03247; large tegument protein UL36; Provisional

    2. NM_001342582.1 → NP_001330105.1  GPI-anchored protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQI7, A0A1P8B9S1

    3. NM_001342581.1 → NP_001318449.1  GPI-anchored protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y118, A0A654FXE0, F4K804
      Conserved Domains (1) summary
      PHA03247
      Location:180 → 297
      PHA03247; large tegument protein UL36; Provisional
    Nucleotide Protein
    Heading Accession and Version

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