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    SIS E3 ubiquitin-protein ligase RLIM-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831782, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SIS
    Official Full Name
    E3 ubiquitin-protein ligase RLIM-like protein
    Primary source
    TAIR:AT5G02020
    Locus tag
    AT5G02020
    See related
    Araport:AT5G02020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Salt Induced Serine rich; T7H20.70; T7H20_70
    Summary
    Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich).
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    Genomic context

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    See SIS in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (385878..388231, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene Auxin efflux carrier family protein Neighboring gene uncharacterized protein Neighboring gene RHO guanyl-nucleotide exchange factor 7 Neighboring gene tRNA-Gly Neighboring gene POX (plant homeobox) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Linking the salt transcriptome with physiological responses of a salt-resistant Populus species as a strategy to identify genes important for stress acclimation. Brinker M, et al. Plant Physiol, 2010 Dec. PMID 20959419, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_120280.4
    NM_180421.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RLIM-like protein
    NP_195822.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59080.1); Has 77 Blast hits to 77 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_850752.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59080.1); Has 52 Blast hits to 52 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      385878..388231 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120280.4 → NP_195822.1  E3 ubiquitin-protein ligase RLIM-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195822.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UAJ1, Q9LZM9

    2. NM_180421.1 → NP_850752.1  E3 ubiquitin-protein ligase RLIM-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850752.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DFG6
    Nucleotide Protein
    Heading Accession and Version

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