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    NOL NYC1-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830372, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NOL
    Official Full Name
    NYC1-like protein
    Primary source
    TAIR:AT5G04900
    Locus tag
    AT5G04900
    See related
    Araport:AT5G04900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUG13.25; MUG13_25; NYC1-like
    Summary
    Encodes a chlorophyll b reducatase involved in the degradation of chlorophyll b and LHCII (light harvesting complex II).
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    Genomic context

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    See NOL in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (1434774..1437495)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene DNA repair REX1-B protein Neighboring gene EAP30/Vps36 family protein Neighboring gene aminophospholipid ATPase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Participation of chlorophyll b reductase in the initial step of the degradation of light-harvesting chlorophyll a/b-protein complexes in Arabidopsis. Horie Y, et al. J Biol Chem, 2009 Jun 26. PMID 19403948, Free PMC Article
    2. Arabidopsis STAYGREEN-LIKE (SGRL) promotes abiotic stress-induced leaf yellowing during vegetative growth. Sakuraba Y, et al. FEBS Lett, 2014 Nov 3. PMID 25261252
    3. 7-Hydroxymethyl chlorophyll a reductase functions in metabolic channeling of chlorophyll breakdown intermediates during leaf senescence. Sakuraba Y, et al. Biochem Biophys Res Commun, 2013 Jan 4. PMID 23200839
    4. STAY-GREEN and chlorophyll catabolic enzymes interact at light-harvesting complex II for chlorophyll detoxification during leaf senescence in Arabidopsis. Sakuraba Y, et al. Plant Cell, 2012 Feb. PMID 22366162, Free PMC Article
    5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_120572.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chlorophyll(ide) b reductase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within PSII associated light-harvesting complex II catabolic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within chlorophyll catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    NYC1-like protein
    NP_568145.1
    • NYC1-like (NOL); FUNCTIONS IN: oxidoreductase activity, chlorophyll(ide) b reductase activity; INVOLVED IN: chlorophyll catabolic process, PSII associated light-harvesting complex II catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G13250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1434774..1437495
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120572.3 → NP_568145.1  NYC1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568145.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LEU3, Q9FF83
      UniProtKB/TrEMBL
      A0A178UDW6, A0A5S9Y1F7
      Conserved Domains (2) summary
      PLN02657
      Location:17 → 140
      PLN02657; 3,8-divinyl protochlorophyllide a 8-vinyl reductase
      cd05233
      Location:82 → 302
      SDR_c; classical (c) SDRs
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LEU3.1

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