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    BLOS2 biogenesis of lysosome organelles complex 1 subunit-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835016, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BLOS2
    Official Full Name
    biogenesis of lysosome organelles complex 1 subunit-like protein
    Primary source
    TAIR:AT5G49550
    Locus tag
    AT5G49550
    See related
    Araport:AT5G49550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    BLOC subunit 2; K6M13.19
    Summary
    Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1.
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    Genomic context

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    See BLOS2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (20106532..20107208, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene SIN-like family protein Neighboring gene Rab5-interacting family protein Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene Putative methyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BLOS1, a putative BLOC-1 subunit, interacts with SNX1 and modulates root growth in Arabidopsis. Cui Y, et al. J Cell Sci, 2010 Nov 1. PMID 20971704
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_124332.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of BLOC-1 complex TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    biogenesis of lysosome organelles complex 1 subunit-like protein
    NP_568711.1
    • CONTAINS InterPro DOMAIN/s: Biogenesis of lysosome-related organelles complex-1, subunit 2 (InterPro:IPR019269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20106532..20107208 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124332.3 → NP_568711.1  biogenesis of lysosome organelles complex 1 subunit-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568711.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K657, Q570L7, Q8LBQ0, Q9FGZ1
      UniProtKB/TrEMBL
      A0A5S9YCI2
      Conserved Domains (1) summary
      pfam10046
      Location:14 → 108
      BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4K657.1

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