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    TCP family transcription factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835266, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TCP family transcription factor
    Primary source
    TAIR:AT5G51910
    Locus tag
    AT5G51910
    See related
    Araport:AT5G51910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MJM18.6; MJM18_6; TCP domain protein 19; TCP19
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (21094547..21095891, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene Peroxidase superfamily protein Neighboring gene Cytochrome P450 family protein Neighboring gene uncharacterized protein Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene Glucose-methanol-choline (GMC) oxidoreductase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Specific TCP transcription factors interact with and stabilize PRR2 within different nuclear sub-domains. Perez M, et al. Plant Sci, 2019 Oct. PMID 31481190
    2. TCP transcription factors are critical for the coordinated regulation of isochorismate synthase 1 expression in Arabidopsis thaliana. Wang X, et al. Plant J, 2015 Apr. PMID 25702611
    3. Independently evolved virulence effectors converge onto hubs in a plant immune system network. Mukhtar MS, et al. Science, 2011 Jul 29. PMID 21798943, Free PMC Article
    4. Analysis of functional redundancies within the Arabidopsis TCP transcription factor family. Danisman S, et al. J Exp Bot, 2013 Dec. PMID 24129704, Free PMC Article
    5. Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners. Marín-de la Rosa N, et al. Plant Physiol, 2014 Oct. PMID 25118255, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The interaction between PRR2 and TCP19 or TCP20 would contribute to the biological function in specific nuclear compartments.
      Title: Specific TCP transcription factors interact with and stabilize PRR2 within different nuclear sub-domains.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_124570.4
    NM_180842.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of defense response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TCP family transcription factor
    NP_200004.1
    • TCP family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT2G45680.1); Has 731 Blast hits to 731 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 731; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_851173.1
    • TCP family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT2G45680.1); Has 731 Blast hits to 731 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 731; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21094547..21095891 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180842.1 → NP_851173.1  TCP family transcription factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851173.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LCV9, Q9LT89
      UniProtKB/TrEMBL
      A0A178UCD4, A0A654GA39
      Conserved Domains (1) summary
      cl23822
      Location:55 → 125
      TCP; TCP family transcription factor

    2. NM_124570.4 → NP_200004.1  TCP family transcription factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200004.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LCV9, Q9LT89
      UniProtKB/TrEMBL
      A0A178UCD4, A0A654GA39
      Conserved Domains (1) summary
      cl23822
      Location:55 → 125
      TCP; TCP family transcription factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LT89.1

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