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    PPAN PETER PAN-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836299, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PPAN
    Official Full Name
    PETER PAN-like protein
    Primary source
    TAIR:AT5G61770
    Locus tag
    AT5G61770
    See related
    Araport:AT5G61770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAC9.8; MAC9_8; PETER PAN-like protein
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    Genomic context

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    See PPAN in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (24815541..24817728)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RmlC-like cupins superfamily protein Neighboring gene inositol polyphosphate kinase 2 beta Neighboring gene TUDOR-SN protein 2 Neighboring gene calnexin 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Brix protein APPAN plays a role in ribosomal RNA processing in Arabidopsis. Choi I, et al. Plant Sci, 2023 Aug. PMID 37146691
    2. SNAIL1 is essential for female gametogenesis in Arabidopsis thaliana. Hao L, et al. J Integr Plant Biol, 2017 Sep. PMID 28776932
    3. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_125571.5
    NM_180911.2
    NM_203247.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in rRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within translation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PETER PAN-like protein
    NP_568939.2
    • PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 1471 Blast hits to 1151 proteins in 223 species: Archae - 0; Bacteria - 34; Metazoa - 730; Fungi - 196; Plants - 73; Viruses - 37; Other Eukaryotes - 401 (source: NCBI BLink).
    NP_851242.1
    • PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 946 Blast hits to 859 proteins in 217 species: Archae - 0; Bacteria - 10; Metazoa - 449; Fungi - 173; Plants - 58; Viruses - 18; Other Eukaryotes - 238 (source: NCBI BLink).
    NP_974976.1
    • PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24815541..24817728
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125571.5 → NP_568939.2  PETER PAN-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568939.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US73, A0A5S9YHB6, F4K3M1
      Conserved Domains (1) summary
      pfam04427
      Location:48 → 288
      Brix; Brix domain

    2. NM_180911.2 → NP_851242.1  PETER PAN-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851242.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ASU7, Q9FLT1
      UniProtKB/TrEMBL
      A0A178US73, A0A5S9YHB6
      Conserved Domains (1) summary
      pfam04427
      Location:48 → 288
      Brix; Brix domain

    3. NM_203247.1 → NP_974976.1  PETER PAN-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974976.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US73, A0A5S9YHB6, F4K3M1
      Conserved Domains (1) summary
      pfam04427
      Location:48 → 288
      Brix; Brix domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ASU7.1

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