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    strawberry notch protein (DUF616) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839718, updated on 18-Sep-2024

    Summary

    Official Full Name
    strawberry notch protein (DUF616)
    Primary source
    TAIR:AT1G28240
    Locus tag
    AT1G28240
    See related
    Araport:AT1G28240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3H9.11; F3H9_11
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (9868257..9872278, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene purine permease 3 Neighboring gene purine permease 1 Neighboring gene uncharacterized protein Neighboring gene Telomerase activating protein Est1 Neighboring gene uncharacterized protein

    General gene information

    NM_102589.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in Golgi apparatus PubMed 

    General protein information

    Preferred Names
    strawberry notch protein (DUF616)
    NP_174145.1
    • Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G53040.2); Has 322 Blast hits to 322 proteins in 41 species: Archae - 14; Bacteria - 34; Metazoa - 0; Fungi - 4; Plants - 225; Viruses - 1; Other Eukaryotes - 44 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9868257..9872278 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102589.4 → NP_174145.1  strawberry notch protein (DUF616) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174145.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8W4K7, Q9FZ97
      UniProtKB/TrEMBL
      A0A5S9W8N3, A0A654EEG6, A0A7G2DW92
      Conserved Domains (1) summary
      pfam04765
      Location:206 → 508
      DUF616; Protein of unknown function (DUF616)
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