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    Ribc1 RIB43A domain with coiled-coils 1 [ Mus musculus (house mouse) ]

    Gene ID: 66611, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ribc1provided by MGI
    Official Full Name
    RIB43A domain with coiled-coils 1provided by MGI
    Primary source
    MGI:MGI:1913861
    See related
    Ensembl:ENSMUSG00000025257 AllianceGenome:MGI:1913861
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2610028I09Rik
    Summary
    Involved in flagellated sperm motility. Is active in axonemal A tubule inner sheath and sperm flagellum. Orthologous to human RIBC1 (RIB43A domain with coiled-coils 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in testis adult (RPKM 6.4), CNS E11.5 (RPKM 0.9) and 11 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ribc1 in Genome Data Viewer
    Location:
    X F3; X 68.46 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (150787576..150799884, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (152004580..152016886, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene hydroxysteroid (17-beta) dehydrogenase 10 Neighboring gene predicted gene, 39540 Neighboring gene STARR-seq mESC enhancer starr_48089 Neighboring gene structural maintenance of chromosomes 1A Neighboring gene predicted gene 15267 Neighboring gene predicted gene 15266

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in axonemal A tubule inner sheath PubMed 
    is_active_in axonemal A tubule inner sheath PubMed 
    is_active_in cellular_component  
    is_active_in sperm flagellum PubMed 

    General protein information

    Preferred Names
    RIB43A-like with coiled-coils protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025660.3NP_079936.1  RIB43A-like with coiled-coils protein 1

      See identical proteins and their annotated locations for NP_079936.1

      Status: VALIDATED

      Source sequence(s)
      AK011592, AL672180
      Consensus CDS
      CCDS30472.1
      UniProtKB/Swiss-Prot
      Q9CS97, Q9D0B8
      Related
      ENSMUSP00000026288.5, ENSMUST00000026288.5
      Conserved Domains (1) summary
      pfam05914
      Location:4379
      RIB43A

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      150787576..150799884 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528966.5XP_006529029.1  RIB43A-like with coiled-coils protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006529029.1

      UniProtKB/Swiss-Prot
      Q9CS97, Q9D0B8
      Conserved Domains (1) summary
      pfam05914
      Location:4379
      RIB43A
    2. XM_006528967.5XP_006529030.1  RIB43A-like with coiled-coils protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006529030.1

      UniProtKB/Swiss-Prot
      Q9CS97, Q9D0B8
      Conserved Domains (1) summary
      pfam05914
      Location:4379
      RIB43A
    3. XM_006528965.5XP_006529028.1  RIB43A-like with coiled-coils protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006529028.1

      UniProtKB/Swiss-Prot
      Q9CS97, Q9D0B8
      Conserved Domains (1) summary
      pfam05914
      Location:4379
      RIB43A
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