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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001170552.1 → NP_001164023.1 krev interaction trapped protein 1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and lacks an alternate in-frame exon, compared to variant 1, resulting in a shorter protein (isoform 2), compared to isoform 1. Isoform 2 is also known as Krit1B.
- Source sequence(s)
-
AK041574, AK087107, AY328895, BB853405, BB855141, BY150935
- Consensus CDS
-
CCDS51409.1
- UniProtKB/TrEMBL
-
Q5U463
- Related
- ENSMUSP00000132375.2, ENSMUST00000171023.8
- Conserved Domains (5) summary
-
- smart00295
Location:421 → 640
- B41; Band 4.1 homologues
- sd00045
Location:291 → 318
- ANK; ANK repeat [structural motif]
- pfam12796
Location:292 → 386
- Ank_2; Ankyrin repeats (3 copies)
- pfam16705
Location:30 → 198
- NUDIX_5; NUDIX, or N-terminal NPxY motif-rich, region of KRIT
- cl17171
Location:636 → 696
- PH-like; Pleckstrin homology-like domain
-
NM_030675.3 → NP_109600.2 krev interaction trapped protein 1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1). Isoform 1 is also known as Krit1A.
- Source sequence(s)
-
AK041574, AK087107, BB619038, BB855141, BC141042
- Consensus CDS
-
CCDS39002.1
- UniProtKB/Swiss-Prot
- Q6S5J6, Q6VSV2, Q7TPR8, Q8C9Q6, Q9EPY2, Q9ERH0
- UniProtKB/TrEMBL
- B2RUA8, Q5U463
- Related
- ENSMUSP00000078985.5, ENSMUST00000080085.9
- Conserved Domains (5) summary
-
- smart00295
Location:421 → 640
- B41; Band 4.1 homologues
- cd13197
Location:636 → 735
- FERM_C_CCM1; FERM domain C-lobe of Cerebral cavernous malformation 1
- sd00045
Location:291 → 318
- ANK; ANK repeat [structural motif]
- pfam12796
Location:292 → 386
- Ank_2; Ankyrin repeats (3 copies)
- pfam16705
Location:30 → 198
- NUDIX_5; NUDIX, or N-terminal NPxY motif-rich, region of KRIT
RNA
-
NR_033173.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) has multiple differences, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AK041574, AK087107, BB591998, BC054819
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000071.7 Reference GRCm39 C57BL/6J
- Range
-
3853156..3894515
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_030254912.1 → XP_030110772.1 krev interaction trapped protein 1 isoform X2
- UniProtKB/TrEMBL
-
Q5U463
- Conserved Domains (5) summary
-
- smart00295
Location:421 → 640
- B41; Band 4.1 homologues
- sd00045
Location:291 → 318
- ANK; ANK repeat [structural motif]
- pfam12796
Location:292 → 386
- Ank_2; Ankyrin repeats (3 copies)
- pfam16705
Location:30 → 198
- NUDIX_5; NUDIX, or N-terminal NPxY motif-rich, region of KRIT
- cl17171
Location:636 → 696
- PH-like; Pleckstrin homology-like domain
-
XM_006503617.4 → XP_006503680.1 krev interaction trapped protein 1 isoform X1
- UniProtKB/Swiss-Prot
- Q6S5J6, Q6VSV2, Q7TPR8, Q8C9Q6, Q9EPY2, Q9ERH0
- UniProtKB/TrEMBL
- B2RUA8, Q5U463
- Related
- ENSMUSP00000143559.2, ENSMUST00000200386.5
- Conserved Domains (5) summary
-
- smart00295
Location:421 → 640
- B41; Band 4.1 homologues
- cd13197
Location:636 → 735
- FERM_C_CCM1; FERM domain C-lobe of Cerebral cavernous malformation 1
- sd00045
Location:291 → 318
- ANK; ANK repeat [structural motif]
- pfam12796
Location:292 → 386
- Ank_2; Ankyrin repeats (3 copies)
- pfam16705
Location:30 → 198
- NUDIX_5; NUDIX, or N-terminal NPxY motif-rich, region of KRIT
-
XM_006503618.5 → XP_006503681.1 krev interaction trapped protein 1 isoform X1
- UniProtKB/Swiss-Prot
- Q6S5J6, Q6VSV2, Q7TPR8, Q8C9Q6, Q9EPY2, Q9ERH0
- UniProtKB/TrEMBL
- B2RUA8, Q5U463
- Conserved Domains (5) summary
-
- smart00295
Location:421 → 640
- B41; Band 4.1 homologues
- cd13197
Location:636 → 735
- FERM_C_CCM1; FERM domain C-lobe of Cerebral cavernous malformation 1
- sd00045
Location:291 → 318
- ANK; ANK repeat [structural motif]
- pfam12796
Location:292 → 386
- Ank_2; Ankyrin repeats (3 copies)
- pfam16705
Location:30 → 198
- NUDIX_5; NUDIX, or N-terminal NPxY motif-rich, region of KRIT
-
XM_030254911.2 → XP_030110771.1 krev interaction trapped protein 1 isoform X1
- UniProtKB/Swiss-Prot
- Q6S5J6, Q6VSV2, Q7TPR8, Q8C9Q6, Q9EPY2, Q9ERH0
- UniProtKB/TrEMBL
- B2RUA8, Q5U463
- Conserved Domains (5) summary
-
- smart00295
Location:421 → 640
- B41; Band 4.1 homologues
- cd13197
Location:636 → 735
- FERM_C_CCM1; FERM domain C-lobe of Cerebral cavernous malformation 1
- sd00045
Location:291 → 318
- ANK; ANK repeat [structural motif]
- pfam12796
Location:292 → 386
- Ank_2; Ankyrin repeats (3 copies)
- pfam16705
Location:30 → 198
- NUDIX_5; NUDIX, or N-terminal NPxY motif-rich, region of KRIT