U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    NIP4;2 NOD26-like intrinsic protein 4;2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833760, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    NIP4;2
    Official Full Name
    NOD26-like intrinsic protein 4;2
    Primary source
    TAIR:AT5G37820
    Locus tag
    AT5G37820
    See related
    Araport:AT5G37820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K22F20.60; K22F20_60; NLM5; NOD26-like intrinsic protein 4;2; NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See NIP4;2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (15050002..15051599)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RHD SIX-LIKE 1 Neighboring gene NOD26-like intrinsic protein 4;1 Neighboring gene oxoprolinase 1 Neighboring gene plastid movement impaired protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Pollen-Specific Aquaporins NIP4;1 and NIP4;2 Are Required for Pollen Development and Pollination in Arabidopsis thaliana. Di Giorgio JA, et al. Plant Cell, 2016 May. PMID 27095837, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables water channel activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    NOD26-like intrinsic protein 4;2
    NP_198598.1
    • NOD26-like intrinsic protein 4;2 (NIP4;2); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: root, flower, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NOD26-like intrinsic protein 4;1 (TAIR:AT5G37810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15050002..15051599
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344221.1 → NP_001330234.1  NOD26-like intrinsic protein 4;2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BA67

    2. NM_123141.2 → NP_198598.1  NOD26-like intrinsic protein 4;2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198598.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8W036, Q9FIZ8
      UniProtKB/TrEMBL
      A0A178UC33, A0A5S9Y9D7
      Conserved Domains (1) summary
      PLN00182
      Location:1 → 283
      PLN00182; putative aquaporin NIP4; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8W036.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.