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    Vps52 / Sac2 family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843471, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Vps52 / Sac2 family
    Primary source
    TAIR:AT1G71300
    Locus tag
    AT1G71300
    See related
    Araport:AT1G71300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3I17.5; F3I17_5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    18
    Sequence:
    Chromosome: 1; NC_003070.9 (26874064..26878319)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene ncRNA Neighboring gene cobalt ion binding protein Neighboring gene ncRNA Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Vps52 / Sac2 family
    NP_001319363.1
    • Vps52 / Sac2 family; CONTAINS InterPro DOMAIN/s: Vps52/Sac2 (InterPro:IPR007258); BEST Arabidopsis thaliana protein match is: Vps52 / Sac2 family (TAIR:AT1G71270.1); Has 611 Blast hits to 569 proteins in 208 species: Archae - 8; Bacteria - 23; Metazoa - 207; Fungi - 140; Plants - 62; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26874064..26878319
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334494.1 → NP_001319363.1  Vps52 / Sac2 family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WTF5

    2. NM_001334495.1 → NP_001320711.1  Vps52 / Sac2 family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I8H2, Q68EC5, Q9FVV6
      UniProtKB/TrEMBL
      A0A5S9WTF5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FVV6.1

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