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    XH/XS domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828058, updated on 18-Sep-2024

    Summary

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    Official Full Name
    XH/XS domain-containing protein
    Primary source
    TAIR:AT4G01180
    Locus tag
    AT4G01180
    See related
    Araport:AT4G01180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2N1.10; F2N1_10
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (501287..503394, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene BTB/POZ/Kelch-associated protein Neighboring gene uncharacterized protein Neighboring gene phosphatidylinositol phosphate kinase 10 Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FDDM1 and FDDM2, Two SGS3-like Proteins, Function as a Complex to Affect DNA Methylation in Arabidopsis. Li S, et al. Genes (Basel), 2022 Feb 12. PMID 35205382, Free PMC Article
    2. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gene silencing by siRNA-directed DNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    XH/XS domain-containing protein
    NP_192027.1
    • XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT5G59390.1); Has 49488 Blast hits to 31983 proteins in 1865 species: Archae - 714; Bacteria - 6983; Metazoa - 22984; Fungi - 2858; Plants - 1632; Viruses - 165; Other Eukaryotes - 14152 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      501287..503394 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116348.1 → NP_192027.1  XH/XS domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192027.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O04614, Q9M150
      Conserved Domains (3) summary
      pfam03468
      Location:29 → 141
      XS; XS domain
      pfam03469
      Location:410 → 550
      XH; XH domain
      pfam07851
      Location:236 → 335
      TMPIT; TMPIT-like protein
    Nucleotide Protein
    Heading Accession and Version

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