U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CAP-gly domain linker [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824672, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    CAP-gly domain linker
    Primary source
    TAIR:AT3G55060
    Locus tag
    AT3G55060
    See related
    Araport:AT3G55060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (20402963..20407103, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene phosphatidylglycerolphosphate synthase 2 Neighboring gene glutathione transferase lambda 2 Neighboring gene Protein phosphatase 2C family protein Neighboring gene LisH/CRA/RING-U-box domains-containing protein Neighboring gene SET domain-containing protein Neighboring gene ABC-2 type transporter family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    • At3g55060_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
    • At3g55060_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
    NM_001339715.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    CAP-gly domain linker
    NP_001319753.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39300.2); Has 61765 Blast hits to 33720 proteins in 2065 species: Archae - 846; Bacteria - 6964; Metazoa - 31967; Fungi - 5247; Plants - 3104; Viruses - 205; Other Eukaryotes - 13432 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20402963..20407103 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115364.3 → NP_191066.1  CAP-gly domain linker [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191066.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2ERD6, Q9M2W0
      Conserved Domains (1) summary
      TIGR02168
      Location:301 → 888
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. NM_001339716.1 → NP_001326555.1  CAP-gly domain linker [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPM7, A0A7G2ERD6

    3. NM_001339715.1 → NP_001319753.1  CAP-gly domain linker [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2ERD6, Q9M2W0
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.