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    ASHH4 histone-lysine N-methyltransferase ASHH4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825166, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ASHH4
    Official Full Name
    histone-lysine N-methyltransferase ASHH4
    Primary source
    TAIR:AT3G59960
    Locus tag
    AT3G59960
    See related
    Araport:AT3G59960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    histone-lysine N-methyltransferase ASHH4; SDG24; SET DOMAIN PROTEIN 24
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    Genomic context

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    See ASHH4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (22148189..22150583)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene ncRNA Neighboring gene Peptidase family C54 protein Neighboring gene ncRNA Neighboring gene methylenetetrahydrofolate reductase 1 Neighboring gene ncRNA Neighboring gene Nucleic acid-binding, OB-fold-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340008.1
    NM_001340010.1
    NM_001340011.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables histone methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase ASHH4
    NP_001319802.1
    • histone-lysine N-methyltransferase ASHH4 (ASHH4); FUNCTIONS IN: histone-lysine N-methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Post-SET domain (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: histone-lysine N-methyltransferase ASHH3 (TAIR:AT2G44150.1); Has 5426 Blast hits to 5341 proteins in 477 species: Archae - 2; Bacteria - 423; Metazoa - 2298; Fungi - 546; Plants - 1031; Viruses - 0; Other Eukaryotes - 1126 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22148189..22150583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340009.1 → NP_001326226.1  histone-lysine N-methyltransferase ASHH4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNM3, A0A654FJE2
      Conserved Domains (2) summary
      smart00570
      Location:61 → 110
      AWS; associated with SET domains
      cd19175
      Location:112 → 250
      SET_ASHR3-like; SET domain (including post-SET domain) found in Arabidopsis thaliana ASH1-related protein 3 (ASHR3) and similar proteins

    2. NM_001340008.1 → NP_001319802.1  histone-lysine N-methyltransferase ASHH4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2H1ZEL3, A0A5S9XMD8

    3. NM_001340011.1 → NP_001326227.1  histone-lysine N-methyltransferase ASHH4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNM3, A0A654FJE2
      Conserved Domains (2) summary
      smart00570
      Location:61 → 110
      AWS; associated with SET domains
      cd19175
      Location:112 → 250
      SET_ASHR3-like; SET domain (including post-SET domain) found in Arabidopsis thaliana ASH1-related protein 3 (ASHR3) and similar proteins

    4. NM_001340010.1 → NP_001326228.1  histone-lysine N-methyltransferase ASHH4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNM3, A0A654FJE2
      Conserved Domains (2) summary
      smart00570
      Location:61 → 110
      AWS; associated with SET domains
      cd19175
      Location:112 → 250
      SET_ASHR3-like; SET domain (including post-SET domain) found in Arabidopsis thaliana ASH1-related protein 3 (ASHR3) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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