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    Transcription factor IIA, alpha/beta subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837262, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transcription factor IIA, alpha/beta subunit
    Primary source
    TAIR:AT1G07480
    Locus tag
    AT1G07480
    See related
    Araport:AT1G07480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22G5.14; F22G5_14
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (2296023..2299544, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Transcription factor IIA, alpha/beta subunit Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ROTUNDIFOLIA like 3 Neighboring gene uncharacterized protein Neighboring gene FTSH protease 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization and functional analysis of Arabidopsis TFIIA reveal that the evolutionarily unconserved region of the large subunit has a transcription activation domain. Li YF, et al. Plant Mol Biol, 1999 Feb. PMID 10092179
    2. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001331702.1
    NM_100622.4
    NM_180606.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of transcription factor TFIIA complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Transcription factor IIA, alpha/beta subunit
    NP_172228.3
    • Transcription factor IIA, alpha/beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: transcription factor TFIIA complex; CONTAINS InterPro DOMAIN/s: Transcription factor IIA, alpha/beta subunit (InterPro:IPR004855), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription factor IIA, alpha subunit, N-terminal (InterPro:IPR013028), Transcription factor IIA, helical (InterPro:IPR009083); BEST Arabidopsis thaliana protein match is: Transcription factor IIA, alpha/beta subunit (TAIR:AT1G07470.1); Has 733 Blast hits to 623 proteins in 191 species: Archae - 0; Bacteria - 29; Metazoa - 394; Fungi - 169; Plants - 77; Viruses - 10; Other Eukaryotes - 54 (source: NCBI BLink).
    NP_850937.1
    • Transcription factor IIA, alpha/beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: transcription factor TFIIA complex; CONTAINS InterPro DOMAIN/s: Transcription factor IIA, alpha/beta subunit (InterPro:IPR004855), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription factor IIA, alpha subunit, N-terminal (InterPro:IPR013028), Transcription factor IIA, helical (InterPro:IPR009083); BEST Arabidopsis thaliana protein match is: Transcription factor IIA, alpha/beta subunit (TAIR:AT1G07470.1); Has 733 Blast hits to 623 proteins in 191 species: Archae - 0; Bacteria - 29; Metazoa - 394; Fungi - 169; Plants - 77; Viruses - 10; Other Eukaryotes - 54 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2296023..2299544 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180606.3 → NP_850937.1  Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850937.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCF5, A0A5S9T3J9, A0A654ECQ8, O49349
      Conserved Domains (2) summary
      cd07976
      Location:330 → 375
      TFIIA_alpha_beta_like; Precursor of TFIIA alpha and beta subunits and similar proteins
      pfam03153
      Location:10 → 375
      TFIIA; Transcription factor IIA, alpha/beta subunit

    2. NM_100622.4 → NP_172228.3  Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172228.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCF5, A0A5S9T3J9, A0A654ECQ8, O49349
      Conserved Domains (2) summary
      cd07976
      Location:330 → 375
      TFIIA_alpha_beta_like; Precursor of TFIIA alpha and beta subunits and similar proteins
      pfam03153
      Location:10 → 375
      TFIIA; Transcription factor IIA, alpha/beta subunit

    3. NM_001331702.1 → NP_001320976.1  Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCF5, A0A1P8APF4, A0A5S9T3J9
    Nucleotide Protein
    Heading Accession and Version

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