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    DNA ligase-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837835, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA ligase-like protein
    Primary source
    TAIR:AT1G12790
    Locus tag
    AT1G12790
    See related
    Araport:AT1G12790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13K23.4; F13K23_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (4358895..4361371, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene UDP-D-glucose/UDP-D-galactose 4-epimerase 1 Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene nucleotide binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis PTD is required for type I crossover formation and affects recombination frequency in two different chromosomal regions. Lu P, et al. J Genet Genomics, 2014 Mar 20. PMID 24656236
    2. The Arabidopsis thaliana PARTING DANCERS gene encoding a novel protein is required for normal meiotic homologous recombination. Wijeratne AJ, et al. Mol Biol Cell, 2006 Mar. PMID 16394097, Free PMC Article
    3. SHOC1 and PTD form an XPF-ERCC1-like complex that is required for formation of class I crossovers. Macaisne N, et al. J Cell Sci, 2011 Aug 15. PMID 21771883
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PTD functions downstream of AtSPO11-1 and AtRAD51 in the meiotic recombination pathway. [PTD]
      Title: Arabidopsis PTD is required for type I crossover formation and affects recombination frequency in two different chromosomal regions.
    2. PARTING DANCERS(PTD)gene has an elevated expression level in meiocytes and is involved in normal meiotic homologous recombination. [PTD]
      Title: The Arabidopsis thaliana PARTING DANCERS gene encoding a novel protein is required for normal meiotic homologous recombination.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_101149.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromosome segregation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in male meiotic nuclear division IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in plant-type sporogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of reciprocal meiotic recombination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in reciprocal meiotic recombination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in resolution of meiotic recombination intermediates IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA ligase-like protein
    NP_563913.1
    • CONTAINS InterPro DOMAIN/s: RuvA domain 2-like (InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4358895..4361371 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101149.4 → NP_563913.1  DNA ligase-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563913.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IDW9, Q1WW75, Q8L9H8, Q9LPX0
      UniProtKB/TrEMBL
      A0A654E9C7
      Conserved Domains (1) summary
      pfam14520
      Location:185 → 240
      HHH_5; Helix-hairpin-helix domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IDW9.1

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