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    UBX domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842246, updated on 18-Sep-2024

    Summary

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    Official Full Name
    UBX domain-containing protein
    Primary source
    TAIR:AT1G59550
    Locus tag
    AT1G59550
    See related
    Araport:AT1G59550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T30E16.10; T30E16_10
    Summary
    This locus is annotated as a protein-coding gene in TAIR10. Based on communication with Jean-Luc GALLOIS (April 2013), this gene is re-annotated as a UBX domain-containing pseudogene. Note that the Map Detail Image on the locus detial page and in GBrowse will not be updated until after the next genome release.
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (21879649..21880788, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene basic leucine-zipper 4 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene E3 Ubiquitin ligase family protein Neighboring gene tRNA-Ser

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    UBX domain-containing protein
    NP_176165.1
    • UBX domain-containing protein; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 281 Blast hits to 255 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 69; Plants - 102; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21879649..21880788 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104649.1 → NP_176165.1  UBX domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176165.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WQY0, A0A654EJY5
      Conserved Domains (3) summary
      cd02958
      Location:78 → 214
      UAS; UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. ...
      cl00155
      Location:229 → 278
      UBQ; Ubiquitin-like proteins
      cl21463
      Location:6 → 44
      UBA_like_SF; UBA domain-like superfamily
    Nucleotide Protein
    Heading Accession and Version

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