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    SNHG17 small nucleolar RNA host gene 17 [ Homo sapiens (human) ]

    Gene ID: 388796, updated on 27-Nov-2024

    Summary

    Official Symbol
    SNHG17provided by HGNC
    Official Full Name
    small nucleolar RNA host gene 17provided by HGNC
    Primary source
    HGNC:HGNC:48600
    See related
    Ensembl:ENSG00000196756 MIM:620808; AllianceGenome:HGNC:48600
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in bone marrow (RPKM 12.9), ovary (RPKM 5.2) and 25 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See SNHG17 in Genome Data Viewer
    Location:
    20q11.23
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (38420588..38435328, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (40148174..40162915, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (37049235..37063971, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:36982312-36982872 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:36982873-36983432 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:36986777-36987278 Neighboring gene lipopolysaccharide binding protein Neighboring gene ReSE screen-validated silencer GRCh37_chr20:36991245-36991414 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:37017902-37018103 Neighboring gene uncharacterized LOC124904901 Neighboring gene small nucleolar RNA SNORA71 Neighboring gene Sharpr-MPRA regulatory region 13566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:37059106-37059606 Neighboring gene uncharacterized LOC124904958 Neighboring gene small nucleolar RNA, H/ACA box 71B Neighboring gene small nucleolar RNA, H/ACA box 71A Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17856 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17857 Neighboring gene small nucleolar RNA, H/ACA box 71C Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17858 Neighboring gene small nucleolar RNA, H/ACA box 71D Neighboring gene small nucleolar RNA SNORA71 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17859 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:37076132-37076686 Neighboring gene small nucleolar RNA, H/ACA box 71E Neighboring gene small nucleolar RNA host gene 11

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Other Names

    • small nucleolar RNA host gene 17 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015366.6 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000690361.2
    2. NR_027241.4 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000660885.3
    3. NR_152753.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000781227.1
    4. NR_152754.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000665735.2
    5. NR_152755.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000665233.4
    6. NR_152756.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000663540.3
    7. NR_152757.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000689414.3
    8. NR_152758.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000666268.2
    9. NR_152759.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000781199.1
    10. NR_152760.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000781230.1
    11. NR_152761.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000456953.9
    12. NR_152762.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000654183.3
    13. NR_152763.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000781191.1
    14. NR_152764.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000417578.9
    15. NR_185920.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000658488.3
    16. NR_185921.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000781193.1
    17. NR_185922.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000662213.1
    18. NR_185923.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000781220.1
    19. NR_185924.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000657216.3
    20. NR_185925.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000651115.2
    21. NR_185926.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000653697.1
    22. NR_185927.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000781236.1
    23. NR_185928.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000701507.2
    24. NR_185929.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000687532.2
    25. NR_185930.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000781213.1
    26. NR_185931.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000655520.3
    27. NR_185932.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000666419.2
    28. NR_185934.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000701521.2
    29. NR_185935.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000701793.2
    30. NR_185936.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000671249.1
    31. NR_185937.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000664073.3
    32. NR_185938.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000701736.2
    33. NR_185939.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000689917.3
    34. NR_185940.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000666331.1
    35. NR_185941.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000658905.2
    36. NR_185942.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
    37. NR_185943.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000665181.2
    38. NR_185944.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000692262.2
    39. NR_185945.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000781201.1
    40. NR_185946.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000661252.1
    41. NR_185947.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000660558.3
    42. NR_185948.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000669480.1
    43. NR_185949.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
    44. NR_185950.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
    45. NR_185951.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000668054.3
    46. NR_185952.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
    47. NR_185953.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
    48. NR_185954.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000781214.1
    49. NR_185955.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000687490.2
    50. NR_185956.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
    51. NR_185957.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000436764.9
    52. NR_185958.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000664636.2
    53. NR_185959.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000669137.2
    54. NR_185960.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000657843.1
    55. NR_185961.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
    56. NR_185962.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
    57. NR_185963.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000670051.1
    58. NR_185964.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000669033.2
    59. NR_185965.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000656320.2
    60. NR_185966.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000781206.1
    61. NR_185967.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000690441.2
    62. NR_185968.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000781226.1
    63. NR_185969.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
    64. NR_185970.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
    65. NR_185972.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
    66. NR_185973.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
    67. NR_185974.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391095
      Related
      ENST00000413755.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      38420588..38435328 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      40148174..40162915 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)