U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SBP1 selenium-binding protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827039, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SBP1
    Official Full Name
    selenium-binding protein 1
    Primary source
    TAIR:AT4G14030
    Locus tag
    AT4G14030
    See related
    Araport:AT4G14030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtSBP1; DL3055C; FCAALL.79; selenium-binding protein 1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SBP1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (8097842..8100340, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Putative methyltransferase family protein Neighboring gene ralf-like 32 Neighboring gene Rapid alkalinization factor (RALF) family protein Neighboring gene selenium-binding protein 2 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Biochemical and biophysical characterization of the selenium-binding and reducing site in Arabidopsis thaliana homologue to mammals selenium-binding protein 1. Schild F, et al. J Biol Chem, 2014 Nov 14. PMID 25274629, Free PMC Article
    2. Arabidopsis putative selenium-binding protein1 expression is tightly linked to cellular sulfur demand and can reduce sensitivity to stresses requiring glutathione for tolerance. Hugouvieux V, et al. Plant Physiol, 2009 Oct. PMID 19710230, Free PMC Article
    3. The SAH7 Homologue of the Allergen Ole e 1 Interacts with the Putative Stress Sensor SBP1 (Selenium-Binding Protein 1) in Arabidopsis thaliana. Dervisi I, et al. Int J Mol Sci, 2023 Feb 10. PMID 36834990, Free PMC Article
    4. Investigation of the interaction of a papain-like cysteine protease (RD19c) with selenium-binding protein 1 (SBP1) in Arabidopsis thaliana. Dervisi I, et al. Plant Sci, 2022 Feb. PMID 35067295
    5. Investigation of the interaction of DAD1-LIKE LIPASE 3 (DALL3) with Selenium Binding Protein 1 (SBP1) in Arabidopsis thaliana. Dervisi I, et al. Plant Sci, 2020 Feb. PMID 31928671

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The SAH7 Homologue of the Allergen Ole e 1 Interacts with the Putative Stress Sensor SBP1 (Selenium-Binding Protein 1) in Arabidopsis thaliana.
      Title: The SAH7 Homologue of the Allergen Ole e 1 Interacts with the Putative Stress Sensor SBP1 (Selenium-Binding Protein 1) in Arabidopsis thaliana.
    2. DALL3 promoter driven GUS assays revealed that the expression patterns defined were overlapping with the patterns reported for AtSBP1 gene, indicating that DALL3 and SBP1 transcripts co-localize.
      Title: Investigation of the interaction of DAD1-LIKE LIPASE 3 (DALL3) with Selenium Binding Protein 1 (SBP1) in Arabidopsis thaliana.
    3. All three SBP genes (SBP1, SBP2, SBP3) are upregulated in response to externally applied selenium compounds and the antioxidant NAC selectively downregulates SBP2. Although the effect on SBP2 levels was the most prominent, in all cases, the concurrent exposure of plants to selenite and the antioxidant supressed the expression of the SBP genes.
      Title: Promoter analysis and functional implications of the selenium binding protein (SBP) gene family in Arabidopsis thaliana.
    4. AtSBP1 binds different metals and selenium, which affects its function in detoxification mechanisms and selenium metabolism
      Title: Biochemical and biophysical characterization of the selenium-binding and reducing site in Arabidopsis thaliana homologue to mammals selenium-binding protein 1.
    5. Selenium-Binding Protein1 (SBP1) gene expression was studied in Arabidopsis thaliana seedlings challenged with several stresses.
      Title: Arabidopsis putative selenium-binding protein1 expression is tightly linked to cellular sulfur demand and can reduce sensitivity to stresses requiring glutathione for tolerance.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001203794.2
    NM_117478.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables selenium binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to selenium ion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cadmium ion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to hydrogen peroxide IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within sulfate assimilation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    selenium-binding protein 1
    NP_001190723.1
    • selenium-binding protein 1 (SBP1); FUNCTIONS IN: selenium binding; INVOLVED IN: response to cadmium ion, response to hydrogen peroxide, cellular response to selenium ion, sulfate assimilation; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), Selenium-binding protein (InterPro:IPR008826); BEST Arabidopsis thaliana protein match is: selenium-binding protein 2 (TAIR:AT4G14040.1).
    NP_193139.1
    • selenium-binding protein 1 (SBP1); FUNCTIONS IN: selenium binding; INVOLVED IN: response to cadmium ion, response to hydrogen peroxide, cellular response to selenium ion, sulfate assimilation; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), Selenium-binding protein (InterPro:IPR008826); BEST Arabidopsis thaliana protein match is: selenium-binding protein 2 (TAIR:AT4G14040.1); Has 911 Blast hits to 901 proteins in 208 species: Archae - 39; Bacteria - 196; Metazoa - 215; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8097842..8100340 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203794.2 → NP_001190723.1  selenium-binding protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190723.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23264, Q42178, Q93WU0
      UniProtKB/TrEMBL
      A0A5S9XS36
      Conserved Domains (1) summary
      pfam05694
      Location:24 → 490
      SBP56; 56kDa selenium binding protein (SBP56)

    2. NM_117478.6 → NP_193139.1  selenium-binding protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193139.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23264, Q42178, Q93WU0
      UniProtKB/TrEMBL
      A0A5S9XS36
      Conserved Domains (1) summary
      pfam05694
      Location:24 → 490
      SBP56; 56kDa selenium binding protein (SBP56)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O23264.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.