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    proline-rich family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817845, updated on 18-Sep-2024

    Summary

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    Official Full Name
    proline-rich family protein
    Primary source
    TAIR:AT2G32840
    Locus tag
    AT2G32840
    See related
    Araport:AT2G32840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T21L14.22; T21L14_22
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (13932839..13934949, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RALF-like 16 Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene beta glucosidase 33

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The DREAM complex represses growth in response to DNA damage in Arabidopsis. Lang L, et al. Life Sci Alliance, 2021 Dec. PMID 34583930, Free PMC Article
    2. DREAM complex suppresses DNA methylation maintenance genes and precludes DNA hypermethylation. Ning YQ, et al. Nat Plants, 2020 Aug. PMID 32661276
    3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_128844.3
    NM_201857.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DRM complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    proline-rich family protein
    NP_180843.2
    • proline-rich family protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G04930.1); Has 812 Blast hits to 721 proteins in 178 species: Archae - 4; Bacteria - 123; Metazoa - 186; Fungi - 136; Plants - 186; Viruses - 37; Other Eukaryotes - 140 (source: NCBI BLink).
    NP_973586.1
    • proline-rich family protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G04930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13932839..13934949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128844.3 → NP_180843.2  proline-rich family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180843.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VY90, A0A7G2EFW9, Q8GYK6
      Conserved Domains (2) summary
      PRK10263
      Location:15 → 206
      PRK10263; DNA translocase FtsK; Provisional
      pfam15306
      Location:218 → 326
      LIN37

    2. NM_201857.1 → NP_973586.1  proline-rich family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973586.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EFW9, F4IUR2
      Conserved Domains (1) summary
      PRK10263
      Location:15 → 206
      PRK10263; DNA translocase FtsK; Provisional
    Nucleotide Protein
    Heading Accession and Version

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