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    Ta11-like non-LTR retrotransposon [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823947, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ta11-like non-LTR retrotransposon
    Primary source
    TAIR:AT3G47920
    Locus tag
    AT3G47920
    See related
    Araport:AT3G47920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (17682952..17683854)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ubiquitin carboxyl-terminal hydrolase-related protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase-related protein Neighboring gene L-galactono-1,4-lactone dehydrogenase Neighboring gene DNAJ heat shock family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_114661.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Ta11-like non-LTR retrotransposon
    NP_190375.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41590.1); Has 154 Blast hits to 152 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17682952..17683854
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114661.1 → NP_190375.1  Ta11-like non-LTR retrotransposon [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190375.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q1PEH5, Q9SU55
      Conserved Domains (2) summary
      pfam14111
      Location:1 → 99
      DUF4283; Domain of unknown function (DUF4283)
      pfam14392
      Location:101 → 148
      zf-CCHC_4; Zinc knuckle
    Nucleotide Protein
    Heading Accession and Version

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