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    Galactose oxidase/kelch repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836178, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Galactose oxidase/kelch repeat superfamily protein
    Primary source
    TAIR:AT5G60570
    Locus tag
    AT5G60570
    See related
    Araport:AT5G60570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUF9.20; MUF9_20
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (24347783..24350164)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Defensin-like (DEFL) family protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein Neighboring gene DHBP synthase RibB-like alpha/beta domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular evolution and selection patterns of plant F-box proteins with C-terminal kelch repeats. Schumann N, et al. Plant Physiol, 2011 Feb. PMID 21119043, Free PMC Article
    2. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001345425.1
    NM_125450.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Galactose oxidase/kelch repeat superfamily protein
    NP_200865.1
    • Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G26930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24347783..24350164
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345424.1 → NP_001331512.1  Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56XE5, Q9FKJ0
      UniProtKB/TrEMBL
      A0A178UDZ8, A0A5S9YG11
      Conserved Domains (2) summary
      PHA03098
      Location:120 → 325
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:180 → 225
      Kelch; KELCH repeat [structural motif]

    2. NM_125450.4 → NP_200865.1  Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200865.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56XE5, Q9FKJ0
      UniProtKB/TrEMBL
      A0A178UDZ8, A0A5S9YG11
      Conserved Domains (2) summary
      PHA03098
      Location:120 → 325
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:180 → 225
      Kelch; KELCH repeat [structural motif]

    3. NM_001345425.1 → NP_001331513.1  Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56XE5, Q9FKJ0
      UniProtKB/TrEMBL
      A0A178UDZ8, A0A5S9YG11
      Conserved Domains (2) summary
      PHA03098
      Location:120 → 325
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:180 → 225
      Kelch; KELCH repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FKJ0.1

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