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    VSR6 VACUOLAR SORTING RECEPTOR 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839974, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VSR6
    Official Full Name
    VACUOLAR SORTING RECEPTOR 6
    Primary source
    TAIR:AT1G30900
    Locus tag
    AT1G30900
    See related
    Araport:AT1G30900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    binding protein of 80 kDa 3;3; BP80-3;3; F17F8.23; VACUOLAR SORTING RECEPTOR 3;3; VACUOLAR SORTING RECEPTOR 6; VSR3;3
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    Genomic context

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    See VSR6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (10996870..11000809)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Peroxidase superfamily protein Neighboring gene uncharacterized protein Neighboring gene Integral membrane HRF1 family protein Neighboring gene Molybdenum cofactor sulfurase family protein Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_102827.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein targeting to vacuole TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Golgi transport complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    VACUOLAR SORTING RECEPTOR 6
    NP_174375.1
    • VACUOLAR SORTING RECEPTOR 6 (VSR6); FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like calcium-binding (InterPro:IPR001881), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 5 (TAIR:AT2G34940.1); Has 12335 Blast hits to 5905 proteins in 215 species: Archae - 2; Bacteria - 51; Metazoa - 11201; Fungi - 6; Plants - 368; Viruses - 0; Other Eukaryotes - 707 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10996870..11000809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102827.2 → NP_174375.1  VACUOLAR SORTING RECEPTOR 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174375.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I7T2, Q9FYH7
      UniProtKB/TrEMBL
      A0A178WI38, A0A5S9WFU1
      Conserved Domains (3) summary
      smart00179
      Location:513 → 541
      EGF_CA; Calcium-binding EGF-like domain
      cl28883
      Location:52 → 175
      PA; Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At ...
      pfam12662
      Location:498 → 516
      cEGF; Complement Clr-like EGF-like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FYH7.3

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